View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_46 (Length: 240)
Name: NF8226_high_46
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 47894702 - 47894499
Alignment:
| Q |
23 |
cagaaaatggagacaagaatacaaagttaatggaagaaaacaaaacaatgaactgatgaacaaaatcaaatgccacccaatcttcaacaaatccttaata |
122 |
Q |
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| T |
47894702 |
cagaaaatggagacaagaatacaaagttaatggaagaaaacaaaacaatgaactgatgaacaaaatcaaatgccacccaatcttcaacaaatccttaata |
47894603 |
T |
|
| Q |
123 |
caagaagaaacctaaatgtcaaaaggaattaagaaaacagatacagagacaccaaaaagccatactcctcaacaatgcacagagagctgttttatttctt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894602 |
caagaagaaacctaaatgtcaaaaggaattaagaaaacagatatagagacaccaaaatgccatactcctcaacaatgcacagagagctgttttatttctt |
47894503 |
T |
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| Q |
223 |
tttg |
226 |
Q |
| |
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|||| |
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| T |
47894502 |
tttg |
47894499 |
T |
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