View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_49 (Length: 227)
Name: NF8226_high_49
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_49 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16329957 - 16329731
Alignment:
| Q |
1 |
aagagtttgatgacaataactgttattcattgcaagaactatttcaaagttcatttttctcttacgcgataaatgttgatcaagtgagccattgcaaaca |
100 |
Q |
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| T |
16329957 |
aagagtttgatgacaataactgttattcattgcaagaactatttcaaagttcatttttctcttacgcgataaatgttgatcaagtgagccattgcaaaca |
16329858 |
T |
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| Q |
101 |
aattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacattttcatgtattgctttgttgagtgcattaacttcagatt |
200 |
Q |
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| T |
16329857 |
aattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacattttcatgtattgctttgttgagtgcattaacttcagatt |
16329758 |
T |
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| Q |
201 |
tgaattctttctctccttggaggcttg |
227 |
Q |
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| T |
16329757 |
tgaattctttctctccttggaggcttg |
16329731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 2971062 - 2971221
Alignment:
| Q |
68 |
gataaatgttgatcaagtgagccattgcaaacaaattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacattttcat |
167 |
Q |
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|||| |||||||||||||||||||||||| ||| | ||||| ||||||| || || ||||| || ||||| || |||| |||||||| ||||| |||| |
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| T |
2971062 |
gatagatgttgatcaagtgagccattgcagacatactcataaacaagaagtcgattatttccttctgaacatgaacctaaaagcatgacaacattctcat |
2971161 |
T |
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| Q |
168 |
gtattgctttgttgagtgcattaacttcagatttgaattctttctctccttggaggcttg |
227 |
Q |
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| T |
2971162 |
gtcttgcttttctaagtacattaacttcagacctaaattccttctctccttggaagcttg |
2971221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 2926164 - 2926299
Alignment:
| Q |
63 |
tacgcgataaatgttgatcaagtgagccattgcaaacaaattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacatt |
162 |
Q |
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|||| ||||||||||| || ||||| |||||||| ||| ||||||| ||||||| || | ||||| || ||||| ||||| |||| |||||| | ||| |
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| T |
2926164 |
tacgtgataaatgttggtctagtgaaccattgcagacatattcataaacaagaagcctatggtttccttcagaacatgatccaagcaacatgacaatatt |
2926263 |
T |
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| Q |
163 |
ttcatgtattgctttgttgagtgcattaacttcaga |
198 |
Q |
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| T |
2926264 |
ttcatgtcttgctgtgcttaatgcatcaacttcaga |
2926299 |
T |
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