View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_5 (Length: 658)
Name: NF8226_high_5
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 29082039 - 29082379
Alignment:
| Q |
1 |
aaatcatctctcttcctctatcgatcgtctcactggaggtannnnnnnnnncttactctttttactttccttgcggattttacaacattgtgctcaaatt |
100 |
Q |
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| T |
29082039 |
aaatcatctctcttcctctatcgatcgtctcactggaggtattttttttt-cttactctttttactttccttgcggattttacaacattgtgctcaaatt |
29082137 |
T |
|
| Q |
101 |
gaatgattcattattggttttgagaaaattgtaatgtttgattataacatcgtgtcactgttattaatgttggaggaatttgttgttgtactgtggtgac |
200 |
Q |
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| T |
29082138 |
gaatgattcattattggttttgagaaaattgtaatgtttgattataacatcgtgtcactgttattaatgttggaggaatttgttgttgtactgtggtgac |
29082237 |
T |
|
| Q |
201 |
accctatgaagcatcgacgctggacacgacaccgacaagtcaacatatgtagtnnnnnnngacaaaattgcgtcaggatcaggcagtgacacacatgttg |
300 |
Q |
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| T |
29082238 |
accctatgaagcatcgacgctggacacgacaccgacaagtcaacatatgtagtaaaaaaagacaaaattgcgtcagtatcaggcagtgacacacatgttg |
29082337 |
T |
|
| Q |
301 |
gtgttggacactagatacaca--ttcaattagaagtgtcggt |
340 |
Q |
| |
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| T |
29082338 |
gtgttggacactagatacacaccttcaattagaagtgtcggt |
29082379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 352 - 647
Target Start/End: Original strand, 29082354 - 29082649
Alignment:
| Q |
352 |
acacaccttcaattagaagtgtcgttgctacagaggtgatacctcctcagtagtagggtcgctagcgatggtgtgtggtggtaccagtacgtaataagca |
451 |
Q |
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| T |
29082354 |
acacaccttcaattagaagtgtcggtgctacagaggtgatacctcctcagtagtagggtcgctagcgatggtgtgtggtggtactagtacgtaataagca |
29082453 |
T |
|
| Q |
452 |
caccattgctgaagttagcaagagtgtgtaagatagtgtatgtacttgtgaccatggttctaaattgtggttgcagttacactttgaaccttgatacttt |
551 |
Q |
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| T |
29082454 |
caccattgctgaagttagcaagagtgtgtaagatagtgtatgtacttgtgatcatggttctaaattgtggttgcagttacactttgaaccttgatacttt |
29082553 |
T |
|
| Q |
552 |
ggnnnnnnnttaggctgatgcggccgcagttatagtagctataccattggaagtttgctcttttgccccccacaattgctcagcctttcggttcat |
647 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29082554 |
ggaaaaaaattaggctgatgcggccgcagttatagtagctataccattggaagtttgctcttttgccccccacaattgctcagcctttcggttcat |
29082649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 1056067 - 1056099
Alignment:
| Q |
354 |
acaccttcaattagaagtgtcgttgctacagag |
386 |
Q |
| |
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|
| T |
1056067 |
acaccttcaattagaagtgtcggtgctacagag |
1056099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 27239619 - 27239660
Alignment:
| Q |
345 |
gacaccgacacaccttcaattagaagtgtcgttgctacagag |
386 |
Q |
| |
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| T |
27239619 |
gacacagacacaccttcaattagaagtgtcggtgctacagag |
27239660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 4790785 - 4790821
Alignment:
| Q |
352 |
acacaccttcaattagaagtgtcgttgctacagaggt |
388 |
Q |
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||||||||||||| |||||||||| |||||||||||| |
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| T |
4790785 |
acacaccttcaatcagaagtgtcggtgctacagaggt |
4790821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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