View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_8 (Length: 583)
Name: NF8226_high_8
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 489 - 571
Target Start/End: Complemental strand, 53950726 - 53950644
Alignment:
| Q |
489 |
tttcatcaccacttttaatccttattttttgcttagcatggtatcacactacttacaaaacaaccttaagttccactaattga |
571 |
Q |
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| T |
53950726 |
tttcatcaccgcttttaatccttattttttgcttagcatggtatcacactacttacaaatcaacctcaagttccactaattga |
53950644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 53951220 - 53951151
Alignment:
| Q |
1 |
atagagattaagaaattgacaaaacaatttcctgcgataatcgcgagtcttatcgcctcatatataaata |
70 |
Q |
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| T |
53951220 |
atagagattaagaaattgacaaaacaatttcgtgcgataatcgcgagtcttatcgcctcatatataaata |
53951151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 53950908 - 53950826
Alignment:
| Q |
307 |
gactaaatttggcaatttgagaaaacagaaaatctctttataacattaccgatgaccacatcatgagttggaatgaattatcc |
389 |
Q |
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| T |
53950908 |
gactaaatttgacaattcggaaaaacataaaatctctttatgacattacggatgaccacgtcatgagttggaatgaattatcc |
53950826 |
T |
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