View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_12 (Length: 534)
Name: NF8226_low_12
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 40511358 - 40511874
Alignment:
| Q |
1 |
tgtatcagttcttttcaccctccactcctctaggcgaacagttatcgattgaaggtatgtctgcgaaattcgagttctattagaggtatggactgataaa |
100 |
Q |
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| T |
40511358 |
tgtatcagttcttttcaccctccactcttctaggcgaacagttatcgattgaaggtatgtctgcgaaattcgagttctattagaggtatggactgataaa |
40511457 |
T |
|
| Q |
101 |
aatttcctatacaattcaatttggcaaactaaattacaaaaaacttcatccctttatgcgtgacttcacaagcagatataaatagaggatgcatgtattt |
200 |
Q |
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| T |
40511458 |
aatttcctatacaattcaatttggcaaactaaattacaaaaaacttcatccctttatgcgtgacttcacaagcagatataaatagaggatgcatgtattt |
40511557 |
T |
|
| Q |
201 |
catggattgttctttgacgctatcttcaaactatctagttcatttaaatgattaaatttctttataaaagaattcttaaaatttggattaggcctaattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40511558 |
catggattgttctttgacgctatcttcaaactatctagttcatttaaatgattaaatttctttataaaagaattcttaaaatttggattaggcgtaattc |
40511657 |
T |
|
| Q |
301 |
aatcctataaaactggttctgaaagtgagagatgcatcacacttctaaacatgtttccacgccatatttcatccaacgtgaaaaatgcttcctattgtgc |
400 |
Q |
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| T |
40511658 |
aatcctataaaactggttctgaaagtgagagatgcatcacacttctaaacatgtttccacgccatatttcatccaacgtgaaaaatgcttcctattgtgc |
40511757 |
T |
|
| Q |
401 |
caagataaataaattaaccgcacttacctgcatattaccaatcaacaatgcgaaaagtaccaatccaagagttgcaaccacaatagcaaccattatttct |
500 |
Q |
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| T |
40511758 |
caagataaataaattaaccgcacttacctgcatattaccaatcaacaatgcgaaaagtaccaatccaagagttgcaaccacaatagcaaccattatttct |
40511857 |
T |
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| Q |
501 |
ccgataaaagtgctagt |
517 |
Q |
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| T |
40511858 |
ccgataaaagtgctagt |
40511874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 517
Target Start/End: Complemental strand, 21612977 - 21612884
Alignment:
| Q |
424 |
ttacctgcatattaccaatcaacaatgcgaaaagtaccaatccaagagttgcaaccacaatagcaaccattatttctccgataaaagtgctagt |
517 |
Q |
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||||||||||||||||||| | |||||| ||||| ||||||||||| ||||||| ||||| |||| |||||||||||| | |||||||||||| |
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| T |
21612977 |
ttacctgcatattaccaatgagcaatgcaaaaagaaccaatccaagggttgcaataacaatggcaaacattatttctccaacaaaagtgctagt |
21612884 |
T |
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