View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_13 (Length: 500)
Name: NF8226_low_13
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 1792772 - 1792337
Alignment:
| Q |
19 |
aactgttacgtcatagagtttaattgccaaaacaaacagatggggtaattgagcaacgcttgacaattttatggggggtttttgaagtttctttgaagtc |
118 |
Q |
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| T |
1792772 |
aactgttacgtcatagagtttaactgccaaaacaaacagatggggtaattgagcaacgcttgacaattttatggggggtttttgaagattctttgaagtc |
1792673 |
T |
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| Q |
119 |
aaggggattgtggacaaaagttacaattttggaggttttttccttcatattcactcagttttgcacctattgttgcatatgttgcgacggaaatacataa |
218 |
Q |
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| T |
1792672 |
aaggggatttttgacaaaagttacaattttggagttttttttcttc-tattcactcagttttgcacctattgttgcatatgttgcgacggaaatacataa |
1792574 |
T |
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| Q |
219 |
catataaccttttgaagtctttgaattcatcatgcttcnnnnnnncagaggaaaattcttttccatatttcttaaaccttagatagtggacgtgtgatat |
318 |
Q |
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| T |
1792573 |
catataaccttttgaagtctttgaattcatcatgcttctttttttcagaggaaaattcttttccagatttcttacaccttagatagtggacgtgtgatat |
1792474 |
T |
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| Q |
319 |
catct----------------atgtatttgtcttttgacaaatgaacaagcatcaaacttgaagccagcaatggaagcataaccaatgaaacactagcag |
402 |
Q |
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| T |
1792473 |
catctatgtatttgtcttttgatgtatttgtcttttgacaaatgaacaagcatcaaacttgaagccaacaatggaagcataaccaatgaaacactagcag |
1792374 |
T |
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| Q |
403 |
tttgatcatatggatcactatatgactggaaaaagtt |
439 |
Q |
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| T |
1792373 |
tttgatcatatggatcactatatgactggaaaaagtt |
1792337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 455
Target Start/End: Original strand, 43307781 - 43307826
Alignment:
| Q |
410 |
atatggatcactatatgactggaaaaagttctatttccagccagaa |
455 |
Q |
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| T |
43307781 |
atatggatccctacatgactggaaaaagttctatttccagccagaa |
43307826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 21012413 - 21012484
Alignment:
| Q |
39 |
taattgccaaaacaaacagatggggtaattgagcaacgcttgacaattttatggggggtttttgaagtttctt |
111 |
Q |
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| T |
21012413 |
taatagccaaaacaaacagagggggtaattgattaacgtttgacaatttcaagtgggg-ttttgaagtttctt |
21012484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 29500137 - 29500069
Alignment:
| Q |
44 |
gccaaaacaaacagat-ggggtaattgagcaacgcttgacaattttatggggggtttttgaagtttctt |
111 |
Q |
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| T |
29500137 |
gccaaaacaaacggagaggggtaattgactaacgtttgacaattttatgagaggtttatgaagtttctt |
29500069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 45114917 - 45115003
Alignment:
| Q |
60 |
ggggtaattgagcaacgcttgacaattttatggggggtttttgaagtttctttgaagtcaaggggattgtggacaaaagttacaattt |
147 |
Q |
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| T |
45114917 |
ggggtaattaactaacgtttgacaatttcatgaggggtttt-gaagtttcttaaaagtcaagggggtttttgacgaaagttacaattt |
45115003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 45576063 - 45576006
Alignment:
| Q |
36 |
gtttaattgccaaaacaaacagatggggtaattgagcaacgcttgacaattttatggg |
93 |
Q |
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| T |
45576063 |
gtttaatagcccaaacaaacggagggggtaattgactaacgtttgacaattttatggg |
45576006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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