View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_15 (Length: 482)
Name: NF8226_low_15
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 48625175 - 48625405
Alignment:
| Q |
1 |
ttatctttccattacccattcatcttcatcactgtccctcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgcc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48625175 |
ttatttttccattacccattcatcttcatcactgtccctcatatgcaaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacgtcgcc |
48625274 |
T |
|
| Q |
101 |
atctctgtaaaacttgcacctcgtcgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggctgtctttctcgctatcacgtct |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||| |
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| T |
48625275 |
atctctgtgaaacttgcacctcgtcgtttctcttcatgagcgttgtccctctcactctcacatcattttatccacggttgtctttctcactatcacgtct |
48625374 |
T |
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| Q |
201 |
ctctttccgccgtgagtcgagatctggagat |
231 |
Q |
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|||||||| |||||||||||||||||||||| |
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| T |
48625375 |
ctctttccaccgtgagtcgagatctggagat |
48625405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 23175187 - 23175001
Alignment:
| Q |
1 |
ttatctttccattacccattcatcttcatcactgtccctcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgcc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
23175187 |
ttatttttccattacccattcatcttcatcactgtccctcatctgcaaaagaatgttgtcttgctgcctcaccatcgccgtcgttcacacccacgtcgcc |
23175088 |
T |
|
| Q |
101 |
atctctgtaaaacttgcacctcgtcgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggctgtctttct |
187 |
Q |
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| T |
23175087 |
atctctgtgaaacttgcacctggctgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggttgtctttct |
23175001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 23586444 - 23586258
Alignment:
| Q |
1 |
ttatctttccattacccattcatcttcatcactgtccctcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgcc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
23586444 |
ttatttttccattacccattcatcttcatcactgtccctcatctgcaaaagaatgttgtcttgctgcctcaccatcgccgtcgttcacacccacgtcgcc |
23586345 |
T |
|
| Q |
101 |
atctctgtaaaacttgcacctcgtcgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggctgtctttct |
187 |
Q |
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|||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23586344 |
atctctgtgaaacttgcacctggctgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggttgtctttct |
23586258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 6759674 - 6759528
Alignment:
| Q |
6 |
tttccattacccattcatcttcatcactgtccctcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgccatctc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |
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| T |
6759674 |
tttccattacccattcatcttcatcactgtccctcatctgcaaaagaatgttgtcttgttgcctcaccatcgccaccgttcacacccacgtcgccatctc |
6759575 |
T |
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| Q |
106 |
tgtaaaacttgcacctcgtcgtttctcttcatgaccgttgtccctct |
152 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
6759574 |
tgtgaaacttgcacctcgccgtttctcttcatgaccgttgtctctct |
6759528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 34347927 - 34348079
Alignment:
| Q |
1 |
ttatctttccattacccattcatcttcatcactgtccc-tcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgc |
99 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |||||| ||||| |||| |
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| T |
34347927 |
ttatttttccattactcattcatcttcatcactgtcccctcatctgcaaaagaatgttgtcttgctgcctcactatcgccgttgttcactcccacgtcgc |
34348026 |
T |
|
| Q |
100 |
catctctgtaaaacttgcacctcgtcgtttctcttcatgaccgttgtccctct |
152 |
Q |
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||||||||| ||||||| |||||| ||||||||||||||||||||||| |||| |
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| T |
34348027 |
catctctgtgaaacttgtacctcgccgtttctcttcatgaccgttgtctctct |
34348079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 34348072 - 34348106
Alignment:
| Q |
197 |
gtctctctttccgccgtgagtcgagatctggagat |
231 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
34348072 |
gtctctctttccaccgtgagtcgagatctggagat |
34348106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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