View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_18 (Length: 473)
Name: NF8226_low_18
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 1093622 - 1093182
Alignment:
| Q |
17 |
tgttcctaaactcaattctatcgtagccgtgctcacatgtccgatggatccaaacctcataagctaccaccaatggagtttagggaccatcacccatgct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1093622 |
tgttcctaaactcaattctatcgtagccgtgctcacatgtccgatggatccaaacctcataagctaccaccaatggagtttagggaccatgacccatgct |
1093523 |
T |
|
| Q |
117 |
tatcataaaagtaatcatctatctactttttaagattagaaacatatataacccataaataaatgcctagatatacaaataaatttgattatgattttga |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1093522 |
tatcataaaagttatcatctatctactttttaagattagaaacatatataacccataaataaatgcctagatatacaaataaatttgattatgattttga |
1093423 |
T |
|
| Q |
217 |
gagtgagaatccaaattaatattgagttcattacttgcatattggtggcacttcctctggtttgaatggttgaggagcaacagcaaaaccaaatgtatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
1093422 |
gagtgagaatccaaattaatattgagttcattacctgcatattggtggcacttcatctggtttgaatgaatgaggagcaatagcaaaaccaaatgtatct |
1093323 |
T |
|
| Q |
317 |
ctccaattagcagcttgcccactaaacaagtgtacattggaataatacataacttttttctttaaatcacgcgtgtaaaactcttttcttacatcaacat |
416 |
Q |
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||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||| || ||||| ||||| ||||| ||||||||||||| | ||| |
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| T |
1093322 |
ctccaattagcaggttttccactaaacaagagtacattagagtaatacataacttttttgttcaaatcccgcgtataaaaatcttttcttacattagcat |
1093223 |
T |
|
| Q |
417 |
cttgttcatgaaagctacggattccatcaatcatttcatcc |
457 |
Q |
| |
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||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
1093222 |
cttgttcgtgaaacttactaattccatcaatcatttcatcc |
1093182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 122 - 457
Target Start/End: Original strand, 49464928 - 49465263
Alignment:
| Q |
122 |
taaaagtaatcatctatctactttttaagattagaaacatatataacccataaataaatgcctagatatacaaataaatttgattatgattttgagagtg |
221 |
Q |
| |
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|||| |||| ||| |||||| |||||||||| | | |||| |||||||||||||||||||| |||||| | | |||| |||||||||||| ||||||| |
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| T |
49464928 |
taaaggtaaacatttatctattttttaagataaaagacatttataacccataaataaatgcttagatagtgagaaaaatatgattatgatttggagagtg |
49465027 |
T |
|
| Q |
222 |
agaatccaaattaatattgagttcattacttgcatattggtggcacttcctctggtttgaatggttgaggagcaacagcaaaaccaaatgtatctctcca |
321 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49465028 |
agaatccaaattaatattgagttcattacctgcatattggtggcacttcctcgggtttgaatggatgaggagcaacagcaaaaccaaatgtatctctcca |
49465127 |
T |
|
| Q |
322 |
attagcagcttgcccactaaacaagtgtacattggaataatacataacttttttctttaaatcacgcgtgtaaaactcttttcttacatcaacatcttgt |
421 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49465128 |
attagcagcttgcccactaaacaagtgtacattagaataatacataacttttttctttaaatcacgcgtgtaaaactcttttcttacatcagcatcttgt |
49465227 |
T |
|
| Q |
422 |
tcatgaaagctacggattccatcaatcatttcatcc |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49465228 |
tcatgaaagctacggattccatcaatcatttcatcc |
49465263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 184 - 457
Target Start/End: Complemental strand, 29463191 - 29462918
Alignment:
| Q |
184 |
tagatatacaaataaatttgattatgattttgagagtgagaatccaaattaatattgagttcattacttgcatattggtggcacttcctctggtttgaat |
283 |
Q |
| |
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||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||| |||||| |
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| T |
29463191 |
tagatatacaattaaatctgattatgatttagagagtgagaatccaaattaatattgagtttattacctgcatatttgtggcacttcatctggattgaat |
29463092 |
T |
|
| Q |
284 |
ggttgaggagcaacagcaaaaccaaatgtatctctccaattagcagcttgcccactaaacaagtgtacattggaataatacataacttttttctttaaat |
383 |
Q |
| |
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|| | |||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||| || |||||| ||||||||||||||||| |
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| T |
29463091 |
ggatcaggagcaatagcaaaaccaaatgtatctctccaattagcaccttgtccattaaacaagcgtacattagagtaatacgaaacttttttctttaaat |
29462992 |
T |
|
| Q |
384 |
cacgcgtgtaaaactcttttcttacatcaacatcttgttcatgaaagctacggattccatcaatcatttcatcc |
457 |
Q |
| |
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| || || |||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
29462991 |
cccgtgtataaaactcttttcttacatcggcatcttgttcatgaaacctacagattccatcaatcatttcatcc |
29462918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 274 - 457
Target Start/End: Complemental strand, 19890713 - 19890530
Alignment:
| Q |
274 |
tggtttgaatggttgaggagcaacagcaaaaccaaatgtatctctccaattagcagcttgcccactaaacaagtgtacattggaataatacataactttt |
373 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||| |
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| T |
19890713 |
tggtttgaatggatgaggagcaacagcaaaaccaattgtatctctccaattagcagcttggccactaaacaaggttccattggagaaatacataactttt |
19890614 |
T |
|
| Q |
374 |
ttctttaaatcacgcgtgtaaaactcttttcttacatcaacatcttgttcatgaaagctacggattccatcaatcatttcatcc |
457 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
19890613 |
ttctttaaatcacgagtgtaaaactcttttcttacatcaacatcttgttcatgaaaactacggattccatgaatcatttcatcc |
19890530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 245 - 457
Target Start/End: Complemental strand, 19844885 - 19844673
Alignment:
| Q |
245 |
cattacttgcatattggtggcacttcctctggtttgaatggttgaggagcaacagcaaaaccaaatgtatctctccaattagcagcttgcccactaaaca |
344 |
Q |
| |
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|||||| ||||||||||||| | ||| |||||||||||||| | |||||||||| | || |||| |||||||||||||| ||||||||| | | |||| | |
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| T |
19844885 |
cattacctgcatattggtggtatttcttctggtttgaatggatcaggagcaacaacgaatccaactgtatctctccaatcagcagcttgactagtaaata |
19844786 |
T |
|
| Q |
345 |
agtgtacattggaataatacataacttttttctttaaatcacgcgtgtaaaactcttttcttacatcaacatcttgttcatgaaagctacggattccatc |
444 |
Q |
| |
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|| | |||||| |||||| |||||||| | ||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
19844785 |
aggttgtattggagaaatacacaactttttcccttaaatcacgcgtataaaactcttttctaacattaacatcttgttcatgaaagttacggattccatg |
19844686 |
T |
|
| Q |
445 |
aatcatttcatcc |
457 |
Q |
| |
|
|||||| |||||| |
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|
| T |
19844685 |
aatcatctcatcc |
19844673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 33769073 - 33769122
Alignment:
| Q |
408 |
catcaacatcttgttcatgaaagctacggattccatcaatcatttcatcc |
457 |
Q |
| |
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||||| |||||||||||||||| |||||||||||| |||||| |||||| |
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| T |
33769073 |
catcagcatcttgttcatgaaacctacggattccactaatcatctcatcc |
33769122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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