View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8226_low_2 (Length: 769)
Name: NF8226_low_2
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 555
Target Start/End: Original strand, 2013449 - 2013989
Alignment:
| Q |
18 |
atttttctgttgtttagtttagacatgaaaattcaaatgttgtgctagttttgtttgaaatttggtatagggataatacagctgcatgctttgagaattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2013449 |
atttttctgttgtttagtttagacatgaaaattcaaatgttgtgctagttttgtttgaaatttggtatagggataatacagctgcatgctttgagaattt |
2013548 |
T |
|
| Q |
118 |
gtgatgctgtggtttttctgtagtcatattgtggttattttgctgtcatattgctttggattaacaatattggataagatatgactggacaatgtgttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2013549 |
gtgatgctgtggtttttctgtagtcatattgtggttattttgctgtcatattgctttggattaacaatattggataagatatgactggacaatgtgttca |
2013648 |
T |
|
| Q |
218 |
taagtggtggactatccaaactttacatgccaattttgtaaggattgagttatgtcaaatccgaattttaagatggtatcaaagag---tattcaaggtc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2013649 |
taagtggtggactatccaaactttacatgtcgattttgtaaggattgagttatgtcaaatccgaattttaagatggtatcaaagagtactattcaaggtc |
2013748 |
T |
|
| Q |
315 |
tattgaactacttgccatcaggtcaccactatcaggttactcaggggtcatgctctaaatgtccagttctgagcatgatgggtgttgagaatatggcctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2013749 |
tattgaactacttgccatcaggtcaccactatcaggttactcaggggtcatgctctaaatgtccagttctgagcatgatgggtgttgagaatatggcctg |
2013848 |
T |
|
| Q |
415 |
aaaatgtgtttctaagtggtggttagtcctcacctaatcctattaactttctgttacgtgtccattgcaaaattcggctgaattatgtttttccaattgt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2013849 |
aaaatgtgtttctaagtggtggttagtcctcacctaatcctattaattttctgttacgtgtccaatgcaaaattcggctgaattatgtttttccaattgt |
2013948 |
T |
|
| Q |
515 |
tggtttcttccgtataattcacaatggggatctgtttgtat |
555 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
2013949 |
tggtttcttccgtataattcacaatcgggatccgtttgtat |
2013989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 2637684 - 2637733
Alignment:
| Q |
252 |
tttgtaaggattgagttatgtcaaatccgaattttaagatggtatcaaag |
301 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
2637684 |
tttgtaaggattgagttagacccaatccaaattttaagatggtatcaaag |
2637733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University