View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_20 (Length: 466)
Name: NF8226_low_20
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 35105160 - 35104709
Alignment:
| Q |
1 |
gaagaagtggtaagagaaggtgttggatggaaatggaataatggccatttgaagacaggtagaagagaatagagaagaagtatgtgatagtgtgaacgaa |
100 |
Q |
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| T |
35105160 |
gaagaagtggtaagagaaggtgttggatggaaatggaataatcgccatttgaagacaggtagaagagaatagagaagaagtatgtgatagtgtgaacgaa |
35105061 |
T |
|
| Q |
101 |
tgaatgaatgtgctatgtgatagtacaatataagaagaaagacattgacattaatagagtactatgtgtatagttgtagatgacgaaataagagaatcaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35105060 |
tgaatgtatgtgctatgtgatagtacaatataagaagaaagacattgacattaatagcgtactatgtgtatagttgtagatgacgaaataagagaatcaa |
35104961 |
T |
|
| Q |
201 |
annnnnnnnnnnnnngaacagtccgtaataacaatgcaccgcattgtttggtgatggtgactacaacataatatatataatggaccccggccattcatgt |
300 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35104960 |
atctctctctctctcgaagagtccgtaataacaatgcaccgcattgtttggtgatggtgactacaacatagtatatataatggaccccggccattcatgt |
35104861 |
T |
|
| Q |
301 |
acaaaaagacaattacttgtcacaatcaaagtcttaagtgatgataggaacataattttgttattcaatctaaannnnnnngttgatataacgtaggatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35104860 |
acaaaaagacaattacttgtcacaatcaaagtcttaagtgatgataggaacataattttgttattcaatctaaatttttttgttgatataacgtaggatc |
35104761 |
T |
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| Q |
401 |
atgtcaagtcttaaattcaattttttctaacctcaattttaataaactaatt |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35104760 |
atgtcaagtcttaaattcaattttttctaacctcaattttaatagactaatt |
35104709 |
T |
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