View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8226_low_21 (Length: 464)
Name: NF8226_low_21
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 13714007 - 13713549
Alignment:
| Q |
1 |
tttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggtttggtatgtatgcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13714007 |
tttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggtttggtatgtatgcat |
13713908 |
T |
|
| Q |
101 |
acacaatttgtccaaactaaacaagcttg------------agaatccattaatctcaaaactaaaaacacatacaatatgaatctctctgtatactata |
188 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713907 |
acacaatttgtccaaattaaacaagcttgcacacaggcttgagaatccattaatctcaaaactaaaaacacatacaatatgaatctctctgtatactata |
13713808 |
T |
|
| Q |
189 |
acatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaactaccatggttga |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713807 |
acatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaactaccatggttga |
13713708 |
T |
|
| Q |
289 |
agctcaatggcacttcaaaaggactaatattaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatggtgctacggccatc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13713707 |
agctcaatggcacttcaaaaggactaatatcaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatggtgctacgaccatc |
13713608 |
T |
|
| Q |
389 |
attacactttaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtat |
447 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713607 |
attacacttaaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtat |
13713549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University