View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8226_low_24 (Length: 426)

Name: NF8226_low_24
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8226_low_24
NF8226_low_24
[»] chr8 (3 HSPs)
chr8 (18-416)||(2027177-2027573)
chr8 (336-388)||(1951380-1951432)
chr8 (235-281)||(1951467-1951513)
[»] chr3 (2 HSPs)
chr3 (22-114)||(26380686-26380778)
chr3 (34-97)||(15102404-15102467)
[»] chr7 (6 HSPs)
chr7 (28-96)||(11512598-11512666)
chr7 (28-89)||(11505882-11505943)
chr7 (135-195)||(11505809-11505865)
chr7 (135-195)||(11512509-11512565)
chr7 (95-127)||(18703902-18703934)
chr7 (136-176)||(18703978-18704018)
[»] scaffold0548 (1 HSPs)
scaffold0548 (34-97)||(10537-10600)


Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 2027177 - 2027573
Alignment:
Q  18 aaggtactgttcactc-gctttgattttgagcttataatgattttgttttgtcttcagctgtataaggattttgttcactggtttcataaaaggtgaaac 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2027177 aaggtactgttcactcagctttgattttgagcttataatgattttgttttgtcttgagctgtataaggattttgttcactggtttcataaaaggtgaaac 2027276  T
Q  117 tttgaactgaagatttgattttttgagtgaaatacaaacatgggtcaaactgttatttttagggaaatgaagcttgtttgttttgtaaacgaaatttcta 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  2027277 tttcaactgaagatttgattttttgagtgaaatacaaacatgggttaaactgtt--ttttagggaaatgaagcttgtttgttttgtaatcgaaatttcta 2027374  T
Q  217 gtagttaaagttctacaaacaaacagtgacattaaagcttgactatggggacgattgttatttgagcttagatttttctctttgcatggaattaattatt 316  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2027375 gtcgttaaagttctacaaacaaacagtgacattaaagcttgactatggggacgattgttatttgagcttagatttttctctttgcatggaattaattatt 2027474  T
Q  317 agtccatannnnnnnagtggatgaaccgttccaatccataaaatatcactttgactaatcaactttactttttagcaaaatttctatattaatcttcttc 416  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2027475 agtccata-tttttcagtggatgaaccgttccaatccataaaatatcactttgactaatcaactttactttttagcaaaatttctatattaatcttcttc 2027573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 1951432 - 1951380
Alignment:
Q  336 gatgaaccgttccaatccataaaatatcactttgactaatcaactttactttt 388  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| || ||||||    
T  1951432 gatgaaccgttccaatccataaagtatcactttcactaatcaatttaactttt 1951380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 1951513 - 1951467
Alignment:
Q  235 acaaacagtgacattaaagcttgactatggggacgattgttatttga 281  Q
    ||||| |||||||| |||||||||||||||| |||| ||||||||||    
T  1951513 acaaagagtgacatcaaagcttgactatgggaacgactgttatttga 1951467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 26380778 - 26380686
Alignment:
Q  22 tactgttcactcgctttgattttgagcttataatgattttgttttgtcttcagctgtataaggattttgttcactggtttcataaaaggtgaa 114  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| || || | ||||||||||||| |||||||||||||||||||||||    
T  26380778 tactgttcactcgctttgattttgagcgtatcatgattttgttttgtgttgagttttataaggattttgctcactggtttcataaaaggtgaa 26380686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 15102467 - 15102404
Alignment:
Q  34 gctttgattttgagcttataatgattttgttttgtcttcagctgtataaggattttgttcactg 97  Q
    |||| |||||||||  ||||| |||||||||||||||| || ||||||| ||||||||||||||    
T  15102467 gcttagattttgagtgtataacgattttgttttgtcttgagatgtataatgattttgttcactg 15102404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 11512666 - 11512598
Alignment:
Q  28 tcactcgctttgattttgagcttataatgattttgttttgtcttcagctgtataaggattttgttcact 96  Q
    |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||| ||||||    
T  11512666 tcactcgctttgattttgagcttataatgattatgttttgttttgagttgtataaggatttttttcact 11512598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 11505943 - 11505882
Alignment:
Q  28 tcactcgctttgattttgagcttataatgattttgttttgtcttcagctgtataaggatttt 89  Q
    |||||||||||||||||||||||||||||||| | |||||| || || ||||||||||||||    
T  11505943 tcactcgctttgattttgagcttataatgattatattttgttttgagttgtataaggatttt 11505882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 11505865 - 11505809
Alignment:
Q  135 ttttttgagtgaaatacaaacatgggtcaaactgttatttttagggaaatgaagcttgttt 195  Q
    |||||||||| ||||||||||||||||||||||||| |||    |||||||||||||||||    
T  11505865 ttttttgagttaaatacaaacatgggtcaaactgtttttt----ggaaatgaagcttgttt 11505809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 11512565 - 11512509
Alignment:
Q  135 ttttttgagtgaaatacaaacatgggtcaaactgttatttttagggaaatgaagcttgttt 195  Q
    |||||||||| ||||||||||||||||||||||||| |||    |||||||||||||||||    
T  11512565 ttttttgagttaaatacaaacatgggtcaaactgtttttt----ggaaatgaagcttgttt 11512509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 18703902 - 18703934
Alignment:
Q  95 ctggtttcataaaaggtgaaactttgaactgaa 127  Q
    |||||||||||||||||||| ||||||||||||    
T  18703902 ctggtttcataaaaggtgaagctttgaactgaa 18703934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 18703978 - 18704018
Alignment:
Q  136 tttttgagtgaaatacaaacatgggtcaaactgttattttt 176  Q
    ||||||||||||||||||||||||||| |||| || |||||    
T  18703978 tttttgagtgaaatacaaacatgggtcgaactttttttttt 18704018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 10537 - 10600
Alignment:
Q  34 gctttgattttgagcttataatgattttgttttgtcttcagctgtataaggattttgttcactg 97  Q
    |||| |||||||||  ||||| |||||||||||||||| || ||||||| ||||||||||||||    
T  10537 gcttagattttgagtgtataacgattttgttttgtcttgagatgtataatgattttgttcactg 10600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University