View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_26 (Length: 395)
Name: NF8226_low_26
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 35 - 363
Target Start/End: Complemental strand, 20757282 - 20756954
Alignment:
| Q |
35 |
tattgcatttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatat |
134 |
Q |
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| T |
20757282 |
tattacatttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaaatgcatgaaaaattgacacaacaaacagaagcatctat |
20757183 |
T |
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| Q |
135 |
acttcagaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacact |
234 |
Q |
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| T |
20757182 |
acttcagaatcatctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacact |
20757083 |
T |
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| Q |
235 |
ccacaacaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaacacaatggtttcaaattgtaattaagttactgcatattatttgc |
334 |
Q |
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| T |
20757082 |
ccacaacaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaacacaatggtttcaaattgtaattaagttactgcatattatttgc |
20756983 |
T |
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| Q |
335 |
atgcattaagaaaaattagtagtgtaatt |
363 |
Q |
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| T |
20756982 |
atgcattaagaaaaattagtagtgtaatt |
20756954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 20752681 - 20752431
Alignment:
| Q |
40 |
catttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatatacttc |
139 |
Q |
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| T |
20752681 |
catttcttgcagagacagtcaatatctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacaacaaacagaagcatctacacttc |
20752582 |
T |
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| Q |
140 |
agaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccaca |
239 |
Q |
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| T |
20752581 |
agaaacacctctcaaaatccatatttgctatagtgattggaagcaatgatatatttggttactataactcaatggatcttcaaaagaaaaatactccaca |
20752482 |
T |
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| Q |
240 |
acaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaa |
290 |
Q |
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| T |
20752481 |
acaatatgtggattccatgacttcctcactaaaaatacaattacaggtaaa |
20752431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 57 - 299
Target Start/End: Complemental strand, 20800535 - 20800293
Alignment:
| Q |
57 |
atcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatatacttcagaaacacctctcaaaa |
156 |
Q |
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| T |
20800535 |
atcaatacatttaacagagcaagtggactactattcacaaatgtatgaagaatcgacaaaacaaatagaagtatcaacacttcagaaacacctctcagaa |
20800436 |
T |
|
| Q |
157 |
tccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccacaacaatatgtggattcca |
256 |
Q |
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| T |
20800435 |
tccatcttctttgttgtgattggcaacaatgatatctttgattacttcaattcaaaggatcttcaaaagaaaaacaccccacaacagtttgtcaaatcca |
20800336 |
T |
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| Q |
257 |
tggcttcctcactaaaagtgcaactacaggtaaacacaatggt |
299 |
Q |
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| T |
20800335 |
tggcttcttcactaaaagtgcaactacaggtaagcacaatggt |
20800293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 380
Target Start/End: Complemental strand, 20756939 - 20756910
Alignment:
| Q |
351 |
tagtagtgtaattaatgagtataatttgtg |
380 |
Q |
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| T |
20756939 |
tagtagtgtaattaatgagtataatttgtg |
20756910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 289
Target Start/End: Original strand, 40640466 - 40640616
Alignment:
| Q |
139 |
cagaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccac |
238 |
Q |
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|||||||| ||||||||||| || ||||||||||||||||||| ||||||| | ||||| || ||| | ||| || |||| |||||||| || |||| |
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| T |
40640466 |
cagaaacatctctcaaaatcaatttttgctgttgtgattggaaacaatgatctctttggatattttgagtcatcagaacttcgtaagaaaaataccccac |
40640565 |
T |
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| Q |
239 |
aacaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaa |
289 |
Q |
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| T |
40640566 |
aacagtatgttgattccatgcttttctcactcaaactgcaactacaggtaa |
40640616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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