View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_28 (Length: 379)
Name: NF8226_low_28
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 8008413 - 8008761
Alignment:
| Q |
1 |
acctaactttacagagatagaatttgacctaactttaagtgatggaatataacctatctgtcttcgtgcatgacactccactaattaatatatcatgtct |
100 |
Q |
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| T |
8008413 |
acctaactttacagagataaaatttgacttaactttaagtgatggaatataacctatctgtcttcgtgcatgacactccactaattaatatatcatgtct |
8008512 |
T |
|
| Q |
101 |
tcttcacttagttattcttggtgtgaatactatgttgttgctggtgactgcatggatttgaagggaacacatatcccattatatatgtttgctgaaggaa |
200 |
Q |
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| T |
8008513 |
tcttcacttagttattcttggtgtgaatactatgttgttgctggtgactgcatggatttgaagggaacacatatcccattatatatgtttgctgaaggaa |
8008612 |
T |
|
| Q |
201 |
atatttgagaatcataacaccaaagccttaaaattggcaagtgtagttggaagggaggctgagagaaatgaccaccaaacttattgcataaatgtgttga |
300 |
Q |
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| T |
8008613 |
atatttgagaatcataacaccaaagccttaaaattggaaagtgtagttggaagtgaggctgagagaaatgaccaccaaacttattgcataaatgtgttga |
8008712 |
T |
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| Q |
301 |
tccggtgtttctagagcccctatggaaccttagtacacttaatgggttg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8008713 |
tccggtgtttctagagcccctatggaaccttagtacacttaatgggttg |
8008761 |
T |
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