View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_29 (Length: 370)
Name: NF8226_low_29
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 26 - 351
Target Start/End: Original strand, 45316140 - 45316467
Alignment:
| Q |
26 |
attgagagctcatctcattattattatttgacacatttctaaaaaataaatggaattaacaattaaaatagaggaagagattgtctcctgtttttgcttc |
125 |
Q |
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| T |
45316140 |
attgagagctcatctcattattattatttgacacatttccaaaaaataaaaggaattaacaattaaaatagaggaagagattgtctcctgtttttgcttc |
45316239 |
T |
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| Q |
126 |
tcaattgtgatcctgatcatctattataaaagtgaaacactgtgttttttaatgttaagaaata--agagagtgtaattaaaggtttggatgcaatcact |
223 |
Q |
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| T |
45316240 |
tcaagtgtgatcctgatcatctattataaaagtgaaacattgtgttttttaatgttaagaaataagagagagtgtaattaaaggtttggatgcaatcacc |
45316339 |
T |
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| Q |
224 |
gaagagttttcccatgagagtttttccactcaagagatgttttgtctaatttattatactcttcagtcttcattacccgacaagagcaacagttatcaat |
323 |
Q |
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| T |
45316340 |
gaagagtttttccatgagagtttttccactcaagagatgttttgtctaatttattatactcttcggtcttcattacccaacaagagcaacagttatcaat |
45316439 |
T |
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| Q |
324 |
agattgttagttaatttatatcatatac |
351 |
Q |
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| T |
45316440 |
agattgttagttaatttatatcatatac |
45316467 |
T |
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