View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8226_low_30 (Length: 351)

Name: NF8226_low_30
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8226_low_30
NF8226_low_30
[»] chr7 (5 HSPs)
chr7 (15-333)||(30165783-30166101)
chr7 (32-317)||(30124785-30125070)
chr7 (212-263)||(30130916-30130967)
chr7 (194-316)||(30119904-30120026)
chr7 (134-177)||(30130841-30130884)
[»] chr8 (2 HSPs)
chr8 (18-321)||(41310820-41311120)
chr8 (63-318)||(43164540-43164795)
[»] chr5 (2 HSPs)
chr5 (202-253)||(42561977-42562028)
chr5 (215-263)||(179414-179462)
[»] chr4 (11 HSPs)
chr4 (198-253)||(48147353-48147408)
chr4 (202-253)||(48863631-48863682)
chr4 (194-253)||(49043804-49043863)
chr4 (202-252)||(50666682-50666732)
chr4 (202-263)||(7878739-7878800)
chr4 (191-263)||(48853037-48853109)
chr4 (202-253)||(7790446-7790497)
chr4 (202-253)||(7908668-7908719)
chr4 (202-253)||(48864401-48864452)
chr4 (202-253)||(49038522-49038573)
chr4 (206-263)||(45371722-45371779)
[»] chr2 (1 HSPs)
chr2 (212-263)||(21426789-21426840)
[»] chr3 (1 HSPs)
chr3 (202-253)||(11024147-11024198)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 30166101 - 30165783
Alignment:
Q  15 agcagagactctatatacaccgccatttgggatctcatcaagtaacggtcaccataggaatgatactcttgcagttgtcctttgtcattaagctttgcta 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30166101 agcagagactctatatacaccgccatttgggatctcataaagtaacggtcaccataggaatgatactcttgcagttgtcctttgtcattaagctttgcta 30166002  T
Q  115 atccaccaccagcaattggtccaactatatcaccgcaatttgtaaagcatattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcttagt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30166001 atccaccaccagcaattggtccaactatatcaccgcaatttgtaaagcatattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcgtagt 30165902  T
Q  215 ccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30165901 ccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatca 30165802  T
Q  315 taaattccacgagaacaat 333  Q
    |||||||||||||||||||    
T  30165801 taaattccacgagaacaat 30165783  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 317
Target Start/End: Original strand, 30124785 - 30125070
Alignment:
Q  32 caccgccatttgggatctcatcaagtaacggtcaccataggaatgatactcttgcagttgtcctttgtcattaagctttgctaatccaccaccagcaatt 131  Q
    |||||| ||||| ||||| |  |||||||  ||||||  ||| |||| |||| |||| |||||||||||||||| |||  | |||||||| | | ||||     
T  30124785 caccgctatttgagatcttacaaagtaacaatcaccacgggagtgatgctctagcagctgtcctttgtcattaaacttcacgaatccaccccta-caatc 30124883  T
Q  132 ggt-ccaactatatcaccgcaatttgtaaagcatattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcttagtccaagatgaatgcact 230  Q
     || ||||||||||||||| | ||||||||| ||||||| ||||| | | ||| |||||| | ||||||| |||||||   ||||||| | |||| || |    
T  30124884 agttccaactatatcaccgaattttgtaaaggatattggggaaaagtgcggagcaggatgcatagaaaaaacaagagttcgagtccaacaggaatccatt 30124983  T
Q  231 gcgtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataa 317  Q
    |||||||| |||||||||| ||||||||||| |  | |||| | | |||||| |||||||||||||  |||||| ||||||||||||    
T  30124984 gcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataa 30125070  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 30130916 - 30130967
Alignment:
Q  212 agtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 263  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcacccatatcttaactgta 30130967  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 316
Target Start/End: Original strand, 30119904 - 30120026
Alignment:
Q  194 agaaaaatcaagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagt 293  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||  |||  |  | | |||||| ||||| |||| |||||     
T  30119904 agaaaaaacaagagtcttaatccaagatgaatgcactgcatattcttgcattacccatatctccactacatccatgtccacaatccatgcactaataagc 30120003  T
Q  294 ccatgaaataccaacaaatcata 316  Q
    |||| ||  ||||||||||||||    
T  30120004 ccatcaagcaccaacaaatcata 30120026  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 30130841 - 30130884
Alignment:
Q  134 tccaactatatcaccgcaatttgtaaagcatattggagaaaaat 177  Q
    |||||||||||||||||||||||||||| ||||| | |||||||    
T  30130841 tccaactatatcaccgcaatttgtaaaggatattagggaaaaat 30130884  T

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Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 41310820 - 41311120
Alignment:
Q  18 agagactctatatacaccgccatttgggatctcatcaagtaacggtcaccataggaatgatactcttgcagttgtcctttgtcattaagctttgctaatc 117  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||| | |||||||||||||| ||||||||||  ||||||    
T  41310820 agagactctgtatacaccgccatttgggatctcataaagcaacggtcactataggagtgatactttagcagttgtcctttgacattaagcttaactaatc 41310919  T
Q  118 caccaccagcaattggtccaactatatcaccgcaatttgtaaagcatattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcttagtcca 217  Q
    |||||   ||   ||||||||| ||||| || |||||||||||||||| ||| ||||| ||| ||   || |||||||||||||||| ||||||||||||    
T  41310920 caccattggc---tggtccaacaatatcgccacaatttgtaaagcataatggggaaaactccggatcggggtgaaaagaaaaatcaaaagtcttagtcca 41311016  T
Q  218 agatgaatgcactgcgtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataa 317  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||| |||||||    |||||||| ||||||||||    
T  41311017 agatgaatgtattgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataa 41311116  T
Q  318 attc 321  Q
    ||||    
T  41311117 attc 41311120  T

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Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 63 - 318
Target Start/End: Original strand, 43164540 - 43164795
Alignment:
Q  63 tcaccataggaatgatactcttgcagttgtcctttgtcattaagctttgctaatccaccaccagcaattggtccaactatatcaccgcaatttgtaaagc 162  Q
    ||||||||||| ||||||||| ||||   ||||||||||| |||||| |||||||||||| |||||| ||||||||| |||||||| | |||||||||||    
T  43164540 tcaccataggagtgatactctagcaggcctcctttgtcatcaagcttcgctaatccaccatcagcaactggtccaacaatatcaccaccatttgtaaagc 43164639  T
Q  163 atattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgt 262  Q
    ||| ||| ||||||||  ||| ||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||    
T  43164640 atactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacagcgtattcttgcattacccatatcttaagtgt 43164739  T
Q  263 agacctctccacattccatacactgataagtccatgaaataccaacaaatcataaa 318  Q
    |||| |||||| ||||||||| |||||||||||  ||| |||||||||||||||||    
T  43164740 agacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaa 43164795  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 42561977 - 42562028
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    ||||| |||||||||||||||||||||||  |||||||| ||||||||||||    
T  42561977 caagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 42562028  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 179462 - 179414
Alignment:
Q  215 ccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 263  Q
    ||||||||||||||||  |||||||| |||||||||||| | |||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgta 179414  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 48147353 - 48147408
Alignment:
Q  198 aaatcaagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    |||| |||||||||||||||||| |||||||||  |||||||| ||||||||||||    
T  48147353 aaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatat 48147408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 48863682 - 48863631
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    ||||||| ||| ||||||||||||||||| ||||||||| ||||||||||||    
T  48863682 caagagttttaatccaagatgaatgcactccgtattcttccatcacccatat 48863631  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 49043804 - 49043863
Alignment:
Q  194 agaaaaatcaagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    ||||||| |||||||||||||||| || |||||||||  |||||||| ||||||||||||    
T  49043804 agaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatat 49043863  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 50666732 - 50666682
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccata 252  Q
    ||||||| |||||||||||||||||||||  |||||||| |||||||||||    
T  50666732 caagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 7878800 - 7878739
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 263  Q
    ||||||| ||| |||||||||||||||||  |||||||| |||||||||||| | |||||||    
T  7878800 caagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgta 7878739  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 48853109 - 48853037
Alignment:
Q  191 aaaagaaaaatcaagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 263  Q
    |||||||| | ||||||||||||||||||| ||| |||||  |||||||| ||| |||||||| | |||||||    
T  48853109 aaaagaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta 48853037  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 7790497 - 7790446
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    ||||||| ||||||||||| |||||||||  |||||||| ||||||||||||    
T  7790497 caagagttttagtccaagacgaatgcactttgtattctttcatcacccatat 7790446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 7908719 - 7908668
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    ||||||| ||| |||||||||||||||||  |||||||| ||||||||||||    
T  7908719 caagagttttattccaagatgaatgcactttgtattctttcatcacccatat 7908668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 48864452 - 48864401
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    ||||| ||||||||||||| |||||||||  |||||||| ||||||||||||    
T  48864452 caagaatcttagtccaagacgaatgcactttgtattctttcatcacccatat 48864401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 49038522 - 49038573
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    ||||||||||||||||||| ||||| |||  |||||||| ||||||||||||    
T  49038522 caagagtcttagtccaagacgaatgaactttgtattctttcatcacccatat 49038573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 45371722 - 45371779
Alignment:
Q  206 agtcttagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 263  Q
    ||||||||||||||| |||||||||  |||||||| ||| |||||||| | |||||||    
T  45371722 agtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgta 45371779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 21426840 - 21426789
Alignment:
Q  212 agtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 263  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||| ||||    
T  21426840 agtccaagatgaatggacagcgtattcttgcatcatccatatcttaattgta 21426789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 11024147 - 11024198
Alignment:
Q  202 caagagtcttagtccaagatgaatgcactgcgtattcttgcatcacccatat 253  Q
    ||||||||||||||||||| |||||||||  |||||||| ||| ||||||||    
T  11024147 caagagtcttagtccaagacgaatgcactttgtattctttcataacccatat 11024198  T

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