View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_32 (Length: 334)
Name: NF8226_low_32
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 31010266 - 31009964
Alignment:
| Q |
16 |
agctaagaataacacaaacactgctcccaactagtgacaaaaaatcagcaaagttaggtaccaaaaatgcgactaaacttaccaccaaaaccaacaacca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010266 |
agctaagaataacacaaacactgctcccaactagtgacaaaaaatcagcaaagttaggtaccaaaaatgcgactaaacttaccaccaaaaccaacaacca |
31010167 |
T |
|
| Q |
116 |
cctaagccacaaacaatacttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010166 |
cctaagccacaaacaatacttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaa |
31010067 |
T |
|
| Q |
216 |
agacctaattgaaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagcaa |
315 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010066 |
agacctaattgtaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagcaa |
31009967 |
T |
|
| Q |
316 |
aac |
318 |
Q |
| |
|
||| |
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|
| T |
31009966 |
aac |
31009964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 9782419 - 9782707
Alignment:
| Q |
20 |
aagaataacacaaacactgctcccaactagtgacaaaaaatcagcaaagttaggtaccaaaaatgcgactaaacttaccaccaaaaccaacaaccaccta |
119 |
Q |
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||||| |||||||||||| || ||||| |||||||||||||||||||| || || ||||||| ||| || ||||| ||||||||||||||||||||||| |
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| T |
9782419 |
aagaacaacacaaacactacttccaacaagtgacaaaaaatcagcaaaatttggcaccaaaactgccaccaaactcaccaccaaaaccaacaaccacctc |
9782518 |
T |
|
| Q |
120 |
agccacaaacaatacttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaaagac |
219 |
Q |
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| ||| ||||||||| |||| | |||||| |||||||||| || ||||||||||||||||||||||||||||| || | ||| | ||| | ||| || | |
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| T |
9782519 |
acccataaacaatacctagaatcacaaaaccttctctcaaaaacctcataaacaggattcatcatcaaaggaaatgtaataaacaaattaatacatagcc |
9782618 |
T |
|
| Q |
220 |
ctaattgaaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagcaaagtaacctaaa |
308 |
Q |
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|||||||||||| | || |||| ||||| |||| ||| |||||||||| | | |||| |||||||||||||||| ||||||||| |
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| T |
9782619 |
ctaattgaaccataacacctatcacaccttgacctaaattattagtaataatatccttagtttcttcaccaaaagcaaaataacctaaa |
9782707 |
T |
|
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