View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_33 (Length: 329)
Name: NF8226_low_33
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 1426841 - 1426525
Alignment:
| Q |
1 |
ctatttcgattgagacaggtaatatttgttttcatcggatactgatatctcctcattttaagttgttaggttttgaagaaattgccttgttgtgtttctg |
100 |
Q |
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| T |
1426841 |
ctatttcgattgagacaggtaatatttgttttcatcggatactgatatctcctcattttaagttgttaggttttgaagaaattgccttgttgtgtttctg |
1426742 |
T |
|
| Q |
101 |
gttgggtaatacaattgtaacacattgaatgttctttgagggagtctatgatgcgtatagcattttaaaacaactgtatagtgcatatttctgttggtat |
200 |
Q |
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| T |
1426741 |
gttgggtaatacaattgtaacacattgaatgttctttgagggagtctatgatgcgtatagcattttaaaacaactgtatagtgcatatttctgttggtat |
1426642 |
T |
|
| Q |
201 |
aaaagcagtttggtgatccttatgtttttgcttgacagattttcaatggtgttttccttaaagttaacaaagcaacaatgaacatgttgcacagggttga |
300 |
Q |
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| T |
1426641 |
aaaagcagtttggtgatccttatgtttttgcttgacagattttcaatggtgttttccttaaagttaacaaagcaacaatgaacatgttgcacagggttga |
1426542 |
T |
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| Q |
301 |
gccttatgtgacttatg |
317 |
Q |
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| T |
1426541 |
gccttatgtgacttatg |
1426525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 49167292 - 49167359
Alignment:
| Q |
250 |
tgttttccttaaagttaacaaagcaacaatgaacatgttgcacagggttgagccttatgtgacttatg |
317 |
Q |
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| T |
49167292 |
tgttttccttgaagttaacaaagcaacaatgaacatgttgcacaaggttgagccttatgtaacttatg |
49167359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 7105873 - 7105800
Alignment:
| Q |
236 |
cagattttcaatggtgttttccttaaagttaacaaagcaacaatgaacatgttgcacagggttgagccttatgt |
309 |
Q |
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||||| || |||||||| || || ||||||||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
7105873 |
cagatctttaatggtgtctttctcaaagttaacaaagcaaccgtgaacatgctccacagggttgagccttatgt |
7105800 |
T |
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