View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_35 (Length: 327)
Name: NF8226_low_35
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 27976725 - 27976426
Alignment:
| Q |
15 |
aagatgttctgatagaattgttgtcgatgtttagagatgaagtatcagtatcctcctgcatgttggatccttgacctgattttctaaaaagtccttcatg |
114 |
Q |
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| T |
27976725 |
aagatgttctgatagaattgttgtcgatgtttagagatgaagtatcagtatcct---gcatgttggatccttgacctgattttctaaaaagtgcttcatg |
27976629 |
T |
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| Q |
115 |
tggtgtatatttgtattatgtggttgttgtgtatggactttcgtctggatttgtgtctggaccgtttatcttctgatttaaaaattgtatctctttgtcc |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27976628 |
tggtgtatatttgtattctgtggttgttgtgtatggactttcgtctggatttgtgtctggaccgtttatcttctgatttaaaaattgtatctctttgtcc |
27976529 |
T |
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| Q |
215 |
attgtcacaagagcattcttcatttctcttaactgcacaaacaaaaataaaattagttggagtacaaaagttttaaatatatatgtgtgtgtgactgatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27976528 |
cttgtcacaagagcattcttcatttctcttaactgcacaaacaaaaataaaattagttggagtacaaaagttttaaatatatatgtgtgtgtgactggtg |
27976429 |
T |
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