View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8226_low_37 (Length: 307)

Name: NF8226_low_37
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8226_low_37
NF8226_low_37
[»] chr1 (4 HSPs)
chr1 (14-288)||(7298540-7298821)
chr1 (14-211)||(47124620-47124819)
chr1 (169-202)||(6815264-6815297)
chr1 (169-202)||(28700026-28700059)
[»] chr4 (7 HSPs)
chr4 (14-211)||(11882873-11883067)
chr4 (14-211)||(33018514-33018715)
chr4 (14-212)||(35347149-35347347)
chr4 (14-211)||(33432739-33432932)
chr4 (169-205)||(23668224-23668260)
chr4 (170-206)||(52106253-52106289)
chr4 (160-211)||(23669246-23669297)
[»] chr3 (4 HSPs)
chr3 (14-208)||(12008925-12009126)
chr3 (14-145)||(47669117-47669248)
chr3 (14-137)||(51985886-51986008)
chr3 (160-211)||(51985799-51985850)
[»] chr8 (6 HSPs)
chr8 (14-144)||(34053192-34053322)
chr8 (160-210)||(34053125-34053175)
chr8 (160-211)||(9370102-9370153)
chr8 (169-202)||(9369095-9369128)
chr8 (169-202)||(9404158-9404191)
chr8 (169-202)||(9406319-9406352)
[»] chr6 (1 HSPs)
chr6 (14-209)||(6535153-6535350)
[»] chr7 (4 HSPs)
chr7 (14-133)||(26761474-26761592)
chr7 (160-212)||(47817419-47817471)
chr7 (170-206)||(41806607-41806643)
chr7 (169-205)||(47818448-47818484)
[»] chr5 (1 HSPs)
chr5 (22-211)||(43070065-43070260)
[»] chr2 (1 HSPs)
chr2 (169-202)||(11873284-11873317)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 7298540 - 7298821
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  7298540 cagagagggatattagagaaaggtgaaagctcatgagagttgagaaggaagaagacaaaggaaaatataattaagtgtatttgatctatggtgtgtttaa 7298639  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnn-------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 206  Q
    ||||||||||||||||||||||||| || |||                     ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  7298640 ccaatctaacggttaggaaatgtcataacgtcaaaaaaaaaaaacaaaaaaaagaggtcatgcacggtaggagacctatataggtctcctaccctaaacg 7298739  T
Q  207 ccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatgaaaatcaattcttattgaaatcaccctaaataa 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7298740 ccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatcaaaatcaattcttattgaaatcaccctaaataa 7298821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 47124819 - 47124620
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||| ||    
T  47124819 cagagagggatattagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaggtgtatttgatctatggtgtgttcaa 47124720  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtc--nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 211  Q
    |||||||||||||||||||| ||| |||| ||                |||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  47124719 ccaatctaacggttaggaaaggtctgaagatcaaaaaaaaaaaaaaaagaggtcatgcacagtagaagatctataaaggtctcccaccctaaacgccgcc 47124620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 6815297 - 6815264
Alignment:
Q  169 cacggtaggagacctataaaggtctcccacccta 202  Q
    ||||||||||||||||| ||||||||||||||||    
T  6815297 cacggtaggagacctatcaaggtctcccacccta 6815264  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 28700026 - 28700059
Alignment:
Q  169 cacggtaggagacctataaaggtctcccacccta 202  Q
    ||||||||||||||||| ||||||||||||||||    
T  28700026 cacggtaggagacctattaaggtctcccacccta 28700059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 11882873 - 11883067
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||    
T  11882873 cagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgttcaa 11882972  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 211  Q
    |||||||||||||||||||| ||| |||||||              |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11882973 ccaatctaacggttaggaaaagtccgaaggtc---aaaaaaaaaaagaggccatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 11883067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 33018514 - 33018715
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| ||    
T  33018514 cagagagggatatcaaagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgttcaa 33018613  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtc----nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 209  Q
    ||||||||||| || | ||| |||  ||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33018614 ccaatctaacgattggaaaaggtccaaaggtcaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 33018713  T
Q  210 cc 211  Q
    ||    
T  33018714 cc 33018715  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 35347149 - 35347347
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||||||    
T  35347149 cagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaaaataatcaagtgtattcgatctatgatgtgtttaa 35347248  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 212  Q
    | ||| |||||||||| ||| |||| || |||               | ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  35347249 ctaatttaacggttagaaaaagtcataaagtcaaaaaaaaaaaaaaaaagtcatgcacggtaggggacctataaaggtctcccaccctagacgcagcct 35347347  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 33432932 - 33432739
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||  ||||||||| |||||||||||||| ||    
T  33432932 cagagagggatat-agagaaaggggaaagctcatgagagttgagagggaagaagacaaatgaaaagataattcagtgtatttaatctatggtgtgttcaa 33432834  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 211  Q
    ||||||||||  ||||||||  || |||| ||               | |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33432833 ccaatctaactattaggaaagatccgaagttcaaaaaaaaaaaa---atgtcatgcacggtaggagatctataaaggtctcccaccctaaacgccgcc 33432739  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 23668260 - 23668224
Alignment:
Q  169 cacggtaggagacctataaaggtctcccaccctaaac 205  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23668260 cacggtaggagacctattaaggtctcccaccctaaac 23668224  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 52106253 - 52106289
Alignment:
Q  170 acggtaggagacctataaaggtctcccaccctaaacg 206  Q
    ||||||||||||||| |||||||||||||||||||||    
T  52106253 acggtaggagacctaaaaaggtctcccaccctaaacg 52106289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 23669246 - 23669297
Alignment:
Q  160 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 211  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  23669246 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 23669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 12009126 - 12008925
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  12009126 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaatataatcaagtgtatttgatctatggtgtgtttaa 12009027  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtc-------nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 206  Q
    |||||||||||||||| |||||||||||| ||                     |||||||||||||||||||||||||||||||||||||||||||||||    
T  12009026 ccaatctaacggttagaaaatgtcagaagatcaaaaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 12008927  T
Q  207 cc 208  Q
    ||    
T  12008926 cc 12008925  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 47669117 - 47669248
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||    
T  47669117 cagagaggaatatgagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctctggtgtgtttaa 47669216  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtc 145  Q
    ||||||||||||||||||||||| ||||||||    
T  47669217 ccaatctaacggttaggaaatgtgagaaggtc 47669248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 51986008 - 51985886
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||| |||||||    
T  51986008 cagagaggtatat-agagaaaggtgaaagctcatgagagttgagaggaaagaagacaaatgaaaagataatcaagtgtatttgatctatggtatgtttaa 51985910  T
Q  114 ccaatctaacggttaggaaatgtc 137  Q
    ||||||||||||||||||||||||    
T  51985909 ccaatctaacggttaggaaatgtc 51985886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 51985850 - 51985799
Alignment:
Q  160 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 211  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  51985850 gaggtcatgtacggtaggagacctataaagatctcccaccctaaacaccgcc 51985799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 34053322 - 34053192
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  34053322 cagagagggatatcagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaa 34053223  T
Q  114 ccaatctaacggttaggaaatgtcagaaggt 144  Q
    |||||||||||||||||||||||||||||||    
T  34053222 ccaatctaacggttaggaaatgtcagaaggt 34053192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 34053175 - 34053125
Alignment:
Q  160 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgc 210  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| |||||||    
T  34053175 gaggtaatgcatggtaggagacctataaaggtttcccaccctacacgccgc 34053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 9370102 - 9370153
Alignment:
Q  160 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 211  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  9370102 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 9370153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 9369128 - 9369095
Alignment:
Q  169 cacggtaggagacctataaaggtctcccacccta 202  Q
    ||||||||||||||||| ||||||||||||||||    
T  9369128 cacggtaggagacctattaaggtctcccacccta 9369095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 9404191 - 9404158
Alignment:
Q  169 cacggtaggagacctataaaggtctcccacccta 202  Q
    ||||||||||||||||| ||||||||||||||||    
T  9404191 cacggtaggagacctattaaggtctcccacccta 9404158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 9406352 - 9406319
Alignment:
Q  169 cacggtaggagacctataaaggtctcccacccta 202  Q
    ||||||||||||||||| ||||||||||||||||    
T  9406352 cacggtaggagacctattaaggtctcccacccta 9406319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 6535153 - 6535350
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||| ||||||||| ||    
T  6535153 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctgtggtgtgttcaa 6535252  T
Q  114 ccaatctaacggttaggaaatgtcagaaggtc--nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 209  Q
     |||||||||| |||||||| ||| |||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6535253 tcaatctaacgattaggaaaggtccgaaggtcaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 6535350  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 26761592 - 26761474
Alignment:
Q  14 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  26761592 cagagagggatat-agagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaa 26761494  T
Q  114 ccaatctaacggttaggaaa 133  Q
    ||||||||||||||||||||    
T  26761493 ccaatctaacggttaggaaa 26761474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 47817471 - 47817419
Alignment:
Q  160 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 212  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || ||||||    
T  47817471 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcct 47817419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 41806643 - 41806607
Alignment:
Q  170 acggtaggagacctataaaggtctcccaccctaaacg 206  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41806643 acggtaggagacctaagaaggtctcccaccctaaacg 41806607  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 47818448 - 47818484
Alignment:
Q  169 cacggtaggagacctataaaggtctcccaccctaaac 205  Q
    ||||||||||||||| | |||||||||||||||||||    
T  47818448 cacggtaggagacctgttaaggtctcccaccctaaac 47818484  T

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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 43070065 - 43070260
Alignment:
Q  22 gatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatcta 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||    
T  43070065 gatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgtttaaccaatcta 43070164  T
Q  122 acggttaggaaatgtcagaaggtcnnnnnnnnnnnnnn------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 211  Q
    |||||||||||| ||| ||||||                     ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43070165 acggttaggaaaggtccgaaggttaaaaaaaaaaaaaaaaaaaagaggtcatgtacggtaggagacctataaaggtctcccaccctaaacgccgcc 43070260  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 11873317 - 11873284
Alignment:
Q  169 cacggtaggagacctataaaggtctcccacccta 202  Q
    ||||||||||||||||| ||||||||||||||||    
T  11873317 cacggtaggagacctatcaaggtctcccacccta 11873284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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