View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_40 (Length: 287)
Name: NF8226_low_40
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 18245654 - 18245779
Alignment:
| Q |
145 |
gttctaaactccaaatatatacatctcttcataagttcatatacacatagttttaaattttaattatggttgcaatataacaatttttgcaaccgaaatt |
244 |
Q |
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| T |
18245654 |
gttctaaactccaaatatatacatctcttcataagttcatatacacatagttttaaattttaattatggttgcaatataacaatttttgcaaccgaaatt |
18245753 |
T |
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| Q |
245 |
taagactatgtgaacacatactaaat |
270 |
Q |
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| T |
18245754 |
taagactatgtgaacacatactaaat |
18245779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 18245418 - 18245505
Alignment:
| Q |
10 |
ctcttcatcttcttctgtaaatgctcttctgttgattcttggatccagttggttgaaccatctcagcctacaactcttgccttcacat |
97 |
Q |
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| T |
18245418 |
ctcttcctcttcttctgtaaatgctcttctgttgattcttggatccagttggttgaaccatctcagcctacaactcttgccttcacat |
18245505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 31791130 - 31791197
Alignment:
| Q |
27 |
taaatgctcttctgttgattcttggatccagttggttgaaccatctcagcctacaactcttgccttca |
94 |
Q |
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| T |
31791130 |
taaaagctcttctattaatccttggatccaattggttgaaccatcttagcctacaactcttaccttca |
31791197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 40752104 - 40752178
Alignment:
| Q |
10 |
ctcttcatcttcttctgtaaatgctcttctgttgattcttggatccagttggttgaaccatctcagcctacaact |
84 |
Q |
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| T |
40752104 |
ctcttcttcctcttctgtgaaaggtcttctgttaattcttggatctagctgattgaaccatctcaacctacaact |
40752178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 27794372 - 27794420
Alignment:
| Q |
36 |
ttctgttgattcttggatccagttggttgaaccatctcagcctacaact |
84 |
Q |
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| T |
27794372 |
ttctgtttattcttgggtccaattgattgaaccatctcaacctacaact |
27794420 |
T |
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