View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_46 (Length: 257)
Name: NF8226_low_46
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_46 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 1092677 - 1092923
Alignment:
| Q |
11 |
cagagacaaaacaatcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaatt |
110 |
Q |
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| T |
1092677 |
cagagacaaaacaatcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaatt |
1092776 |
T |
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| Q |
111 |
ctataggtagtaattccatgctttgttagagtcataatacacttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaatta |
210 |
Q |
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| T |
1092777 |
ctataggtagtaattccatgctttgttagagtcataatacacttccattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaatta |
1092876 |
T |
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| Q |
211 |
gaggaaaccactaattccacttatgatagagaagctgaagtgaaagc |
257 |
Q |
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| T |
1092877 |
gaggaaaccactaattccacttatgatagagaagctgaagtgaaagc |
1092923 |
T |
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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 49465622 - 49465522
Alignment:
| Q |
155 |
ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa |
254 |
Q |
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| T |
49465622 |
ctattctggttttgtttc--cttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctgaagtgaa |
49465525 |
T |
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| Q |
255 |
agc |
257 |
Q |
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| T |
49465524 |
agc |
49465522 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 19890171 - 19890269
Alignment:
| Q |
155 |
ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa |
254 |
Q |
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| T |
19890171 |
ctattttggtgttgtttt--cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacagaagtgaa |
19890268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 29462555 - 29462659
Alignment:
| Q |
151 |
acttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaag |
250 |
Q |
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| T |
29462555 |
acttttattctggtgttgtttg--cctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaag |
29462652 |
T |
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| Q |
251 |
tgaaagc |
257 |
Q |
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| T |
29462653 |
ttaaagc |
29462659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 19844333 - 19844414
Alignment:
| Q |
176 |
ctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagc |
257 |
Q |
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||||||| |||||||| |||||| |||||||| |||| || ||||||||||||||||||||||| | |||||||||||| |
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| T |
19844333 |
ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagc |
19844414 |
T |
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