View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8226_low_47 (Length: 256)

Name: NF8226_low_47
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8226_low_47
NF8226_low_47
[»] chr2 (10 HSPs)
chr2 (77-220)||(40947987-40948126)
chr2 (10-80)||(37259667-37259737)
chr2 (10-76)||(16431889-16431955)
chr2 (10-78)||(14805572-14805640)
chr2 (10-78)||(17692632-17692700)
chr2 (10-62)||(15332771-15332823)
chr2 (10-77)||(37080743-37080810)
chr2 (10-78)||(33751504-33751572)
chr2 (10-77)||(7091127-7091194)
chr2 (40-82)||(7553344-7553386)
[»] chr7 (5 HSPs)
chr7 (10-76)||(29245290-29245356)
chr7 (10-77)||(45974461-45974528)
chr7 (10-77)||(6444179-6444246)
chr7 (10-78)||(34095869-34095937)
chr7 (10-81)||(47329682-47329753)
[»] scaffold0166 (1 HSPs)
scaffold0166 (10-82)||(25086-25158)
[»] chr5 (6 HSPs)
chr5 (10-82)||(24782703-24782775)
chr5 (10-78)||(40321511-40321579)
chr5 (10-76)||(41405992-41406058)
chr5 (10-79)||(31480457-31480526)
chr5 (10-76)||(1836031-1836097)
chr5 (29-82)||(39885872-39885925)
[»] chr8 (5 HSPs)
chr8 (10-76)||(533722-533788)
chr8 (10-76)||(13800640-13800706)
chr8 (10-76)||(3877569-3877635)
chr8 (27-73)||(30089221-30089267)
chr8 (39-73)||(30936663-30936697)
[»] chr1 (7 HSPs)
chr1 (10-87)||(45346253-45346330)
chr1 (10-76)||(12983558-12983624)
chr1 (10-76)||(45319607-45319673)
chr1 (10-76)||(47036282-47036348)
chr1 (10-70)||(22105398-22105458)
chr1 (22-86)||(52382608-52382672)
chr1 (10-73)||(49410539-49410602)
[»] chr3 (8 HSPs)
chr3 (10-77)||(39831200-39831267)
chr3 (10-76)||(20108083-20108149)
chr3 (10-76)||(29835796-29835862)
chr3 (10-76)||(12945491-12945557)
chr3 (29-76)||(29702389-29702436)
chr3 (10-76)||(5234743-5234809)
chr3 (10-76)||(33213415-33213481)
chr3 (10-77)||(31654615-31654683)
[»] chr4 (8 HSPs)
chr4 (10-76)||(20135449-20135515)
chr4 (10-77)||(55917400-55917467)
chr4 (10-76)||(24226870-24226936)
chr4 (9-76)||(42063003-42063070)
chr4 (10-75)||(47028101-47028166)
chr4 (29-77)||(15530059-15530107)
chr4 (10-73)||(28683093-28683155)
chr4 (21-76)||(45988116-45988171)
[»] scaffold0896 (1 HSPs)
scaffold0896 (10-76)||(1964-2030)
[»] chr6 (2 HSPs)
chr6 (10-76)||(7124334-7124400)
chr6 (10-67)||(4181260-4181317)
[»] scaffold0662 (1 HSPs)
scaffold0662 (10-75)||(6980-7045)
[»] scaffold0685 (1 HSPs)
scaffold0685 (22-86)||(6621-6685)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 40947987 - 40948126
Alignment:
Q  77 ataaataaaacctagaggccaaaactaatactaatagaagaaattaagatcaagaaagattgttcatcgaggtactattttccctgtagtgctgcctatt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40947987 ataaataaaacctagaggccaaaactaatactaatagaagaaa----gatcaagaaagattgttcatcgaggtactattttccctgtagtgctgcctatt 40948082  T
Q  177 tgcttggatgtgtatccagatgaagaaagatcaagaactgatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40948083 tgcttggatgtgtatccagatgaagaaagatcaagaactgatga 40948126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 37259737 - 37259667
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataa 80  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37259737 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccataa 37259667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 16431889 - 16431955
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16431889 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 16431955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 14805640 - 14805572
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 78  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  14805640 attattattggatgtaggataacttctctgaaaaattcaatttaatgacttcaccatagaatttcccat 14805572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 17692632 - 17692700
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 78  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  17692632 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattttccat 17692700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 15332771 - 15332823
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttca 62  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  15332771 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttca 15332823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 37080743 - 37080810
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 77  Q
    |||||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||||    
T  37080743 attattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccatagaatttccca 37080810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 33751572 - 33751504
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 78  Q
    |||||| ||||||||| | ||||||| | ||||||||||||| ||  ||||||||||||||||||||||    
T  33751572 attattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttcccat 33751504  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 7091127 - 7091194
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 77  Q
    |||||| ||||||||| | ||||||| | ||||||||||||| ||  |||||||||||||||||||||    
T  7091127 attattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttccca 7091194  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 7553386 - 7553344
Alignment:
Q  40 aaaaagtcaatttaataacttcaccatagaatttcccataaat 82  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||    
T  7553386 aaaaagtcattttaacaacttcaccatagaatttcccaaaaat 7553344  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 29245290 - 29245356
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29245290 attattattggatgtaggataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 29245356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 45974461 - 45974528
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 77  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45974461 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccca 45974528  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 6444179 - 6444246
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 77  Q
    |||||| ||| ||||| ||||||||| | ||||||||||||| ||| |||||||||||||||||||||    
T  6444179 attattattgaatgtaggataacttcaccgaaaaagtcaattgaatgacttcaccatagaatttccca 6444246  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 34095869 - 34095937
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 78  Q
    |||||| ||| ||||| ||||||||| |  |||||||||||| ||| ||||||||||||||||||||||    
T  34095869 attattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcccat 34095937  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 47329682 - 47329753
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaa 81  Q
    |||||| ||||||||| |||||||||    |||||||||||| ||||||||||||||| |||||||| ||||    
T  47329682 attattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaatttcccttaaa 47329753  T

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Target: scaffold0166 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 25158 - 25086
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaat 82  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  25158 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaaaat 25086  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 24782775 - 24782703
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaat 82  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  24782775 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaaaat 24782703  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 40321511 - 40321579
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 78  Q
    |||||| ||||||||| |||||||||   ||||||||||||| || |||||||||||||||||||||||    
T  40321511 attattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttcccat 40321579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 41406058 - 41405992
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| |||||||||   ||||||||||||| || |||||||||||||||||||||    
T  41406058 attattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 41405992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 31480526 - 31480457
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccata 79  Q
    |||||| ||||||||| | ||||||| | ||||||||||||| ||| ||||| |||||||||||||||||    
T  31480526 attattattggatgtagggtaacttcaccgaaaaagtcaattgaatgacttctccatagaatttcccata 31480457  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 1836031 - 1836097
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| |||||||||   |||||| |||||| || |||||||||||||||||||||    
T  1836031 attattattggatgtaggataacttcatcgaaaaaatcaattgaacaacttcaccatagaatttccc 1836097  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 39885872 - 39885925
Alignment:
Q  29 taacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaat 82  Q
    ||||||| | ||||||||||||| || ||||||||||||||||||||| |||||    
T  39885872 taacttcaccgaaaaagtcaattgaacaacttcaccatagaatttcccttaaat 39885925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 533722 - 533788
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  533722 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 533788  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 13800706 - 13800640
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| |||||||||   ||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  13800706 attattattggatgtagagtaacttcactgaaaaagtcaattgaatgacttcaccatagaatttccc 13800640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 3877635 - 3877569
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| | ||||||| | |||||| |||||| ||  ||||||||||||||||||||    
T  3877635 attattattggatgtagggtaacttcaccgaaaaaatcaattgaacgacttcaccatagaatttccc 3877569  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 30089221 - 30089267
Alignment:
Q  27 gataacttctctgaaaaagtcaatttaataacttcaccatagaattt 73  Q
    ||||||||| ||||||||||||||| ||  |||||||||||||||||    
T  30089221 gataacttcactgaaaaagtcaattgaaagacttcaccatagaattt 30089267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 30936697 - 30936663
Alignment:
Q  39 gaaaaagtcaatttaataacttcaccatagaattt 73  Q
    ||||||||||||| |||||||||||||||||||||    
T  30936697 gaaaaagtcaattaaataacttcaccatagaattt 30936663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 45346330 - 45346253
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaataaaac 87  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||||    
T  45346330 attattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccgtagaatttcccttaaaaaaaac 45346253  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 12983558 - 12983624
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  12983558 attattattgaatgtaggataacttctctgaaaaagtcaatttattgacttcaccatagaatttccc 12983624  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 45319673 - 45319607
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||| ||||||||||||||| |  |||||||||||| ||| ||||||||||||||||||||    
T  45319673 attattattgaatgtaagataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttccc 45319607  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 47036282 - 47036348
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| | |||||||  |||| ||||||||| ||| ||||||||||||||||||||    
T  47036282 attattattggatgtatggtaacttcattgaagaagtcaattgaatgacttcaccatagaatttccc 47036348  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 22105458 - 22105398
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaa 70  Q
    |||||| ||||||||| ||||||||| | ||||||||||||| || ||||||| |||||||    
T  22105458 attattattggatgtaggataacttcaccgaaaaagtcaattgaagaacttcatcatagaa 22105398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 52382672 - 52382608
Alignment:
Q  22 tgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaataaaa 86  Q
    |||| ||| ||||| | ||| |||||| ||||| |||||||||||||||||||||| ||||||||    
T  52382672 tgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaaaataaaa 52382608  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 49410539 - 49410602
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaattt 73  Q
    |||||| ||||||||| | ||||||| | |||||||||| || || ||||||||||||||||||    
T  49410539 attattattggatgtagggtaacttcaccgaaaaagtcatttgaagaacttcaccatagaattt 49410602  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 39831267 - 39831200
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 77  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  39831267 attattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttccca 39831200  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 20108083 - 20108149
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||    
T  20108083 attattattggatgtaagataacttcaccaaaaaagtcaattgaataacttcaccatagaatttccc 20108149  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 29835796 - 29835862
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| | ||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  29835796 attattattggatgtagggtaacttcactgaaaaagtcaattgaatgacttcaccatagaatttccc 29835862  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 12945491 - 12945557
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| |||||||||   ||||||||||||| || |||||||||||||||||||||    
T  12945491 attattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 12945557  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 29702436 - 29702389
Alignment:
Q  29 taacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    ||||||| | ||||||||||||| || |||||||||||||||||||||    
T  29702436 taacttcaccgaaaaagtcaattgaacaacttcaccatagaatttccc 29702389  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 5234743 - 5234809
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||| ||||| |||||||||    |||||||||||| ||||||||||||||| ||||||||    
T  5234743 attattattgaatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaatttccc 5234809  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 33213481 - 33213415
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| | |||||||   ||||||||||||| ||| |||| |||||||||||||||    
T  33213481 attattattggatgtatggtaacttcatcgaaaaagtcaattaaatgactttaccatagaatttccc 33213415  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 31654683 - 31654615
Alignment:
Q  10 attattcttggat-gtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 77  Q
    |||||| |||||| ||| ||||||||| | |||||||| |||| ||| |||||||| ||||||||||||    
T  31654683 attattattggatcgtaggataacttcaccgaaaaagttaattgaatgacttcaccgtagaatttccca 31654615  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 20135449 - 20135515
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  20135449 attattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttccc 20135515  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 55917467 - 55917400
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 77  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  55917467 attattattgaatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattcccca 55917400  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 24226936 - 24226870
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||||||||| |||||||||   ||||||||||||| || |||||||||||||||||||||    
T  24226936 attattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 24226870  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 42063070 - 42063003
Alignment:
Q  9 tattattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    ||||||| ||| ||||| ||||||||| |  |||||||||||| ||| ||||||||||||||||||||    
T  42063070 tattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttccc 42063003  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 47028166 - 47028101
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcc 75  Q
    |||||| ||| ||||| ||||||||| |  |||||||||||| ||| |||||||||||||||||||    
T  47028166 attattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcc 47028101  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 15530107 - 15530059
Alignment:
Q  29 taacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 77  Q
    ||||||| | ||||||||||||| || ||||||||||||||||||||||    
T  15530107 taacttcaccgaaaaagtcaattgaacaacttcaccatagaatttccca 15530059  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 28683093 - 28683155
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaattt 73  Q
    |||||| ||||||||| ||||||||| | ||||| ||||||||||  |||||||||||||||||    
T  28683093 attattattggatgtaggataacttcaccgaaaa-gtcaatttaaggacttcaccatagaattt 28683155  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 45988171 - 45988116
Alignment:
Q  21 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    ||||| ||||||||| | ||||||||||||| ||| ||||||||||| ||||||||    
T  45988171 atgtaggataacttcaccgaaaaagtcaattgaatgacttcaccataaaatttccc 45988116  T

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Target: scaffold0896 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 1964 - 2030
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  1964 attattattgaatgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaatttccc 2030  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 7124400 - 7124334
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 76  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  7124400 attattattgaatgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaatttccc 7124334  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 4181260 - 4181317
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccata 67  Q
    |||||| ||||||||| |||||||||    |||||||||||| |||||||||||||||    
T  4181260 attattattggatgtaggataacttcataaaaaaagtcaattgaataacttcaccata 4181317  T

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Target: scaffold0662 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 7045 - 6980
Alignment:
Q  10 attattcttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcc 75  Q
    |||||| ||| ||||| ||||||||| |  |||||||||||| ||| |||||||||||||||||||    
T  7045 attattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcc 6980  T

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Target: scaffold0685 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 6685 - 6621
Alignment:
Q  22 tgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaataaaa 86  Q
    |||| ||| ||||| | ||| |||||| ||||| |||||||||||||||||||||| ||||||||    
T  6685 tgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaaaataaaa 6621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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