View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_48 (Length: 255)
Name: NF8226_low_48
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 8007849 - 8008091
Alignment:
| Q |
13 |
tttggtgtttgatgtactcaacatttgaagatgcaaggattcaattgtcactttcaacaagacttaacaacactaatatttattgtttttaaaaaagcat |
112 |
Q |
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| T |
8007849 |
tttggtgtttgatgtactcaacattcgaagatgcaaggattcaattgtcactttcaacaagacttaacaacactaatatttattctttttaaaaaagcat |
8007948 |
T |
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| Q |
113 |
cttgctaggccgatgatttaactttttaaaaagaaaatagagaaagagagttttctttattgattaaaatgacattaattgtcattttataaatgtctgc |
212 |
Q |
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| T |
8007949 |
cttgcaaggccgatgatttaacttttaaaaaagaaaatagagaaagagagttttctttattgattaaaatgacattaattgtcattttataaatgtctgc |
8008048 |
T |
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| Q |
213 |
gagttggaacttaatttcttgagttataagactaaactctttc |
255 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8008049 |
gagttggaacttaatttctcgagttataagactaaactctttc |
8008091 |
T |
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