View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8226_low_51 (Length: 253)
Name: NF8226_low_51
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_51 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 75 - 253
Target Start/End: Complemental strand, 3808083 - 3807911
Alignment:
| Q |
75 |
tttcgtgtggttgattatcttgtttaacaaatgtatcctctctactttgatgatgatgagacatgatgttgcatgctatatgttgttttggtatttgata |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3808083 |
tttcgtgtggttgattatcttgtttaacaaatgtattatct------tgatgatgatgagacatgatgttgcatgctatatgttgttttggtatttgata |
3807990 |
T |
|
| Q |
175 |
acttacatggaatgcactaaccggtaataggcacttatgtattatatgtttgactaagaccgtcttcaagcttgataat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3807989 |
acttacatggaatgcactaaccggtaataggcacttatgtattatatgtttgactaagaccgtcttcaagcttgataat |
3807911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 3808273 - 3808207
Alignment:
| Q |
12 |
gattatactttagaatttttggtttaaagtaaatgtttatgttgccactttaattgatctctctttc |
78 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
3808273 |
gattatactttggagtttttggtttaaagtaaatgtttatgttgctacttaaattgatctctctttc |
3808207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 209807 - 209710
Alignment:
| Q |
130 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtattatatgtttga |
227 |
Q |
| |
|
||||| ||||| ||||||||||| |||| ||||||||||||||||| || |||| | ||||| || |||||| |||||| |||||| | ||||||| |
|
|
| T |
209807 |
atgagtcatgacgttgcatgctacatgtggttttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtattctgtgtttga |
209710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 206380 - 206293
Alignment:
| Q |
130 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtatt |
217 |
Q |
| |
|
||||| ||||| ||||||||||| |||| ||||||||||||||||| || |||| | ||||| || |||||| |||||| |||||| |
|
|
| T |
206380 |
atgagtcatgacgttgcatgctacatgtggttttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtatt |
206293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 6901960 - 6902057
Alignment:
| Q |
130 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtattatatgtttga |
227 |
Q |
| |
|
||||| ||||| ||||||||||| |||| |||||||||||||||| || |||| | ||||| || |||||| |||||| |||||| | ||||||| |
|
|
| T |
6901960 |
atgagtcatgacgttgcatgctacatgtgattttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtattctgtgtttga |
6902057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University