View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8226_low_55 (Length: 240)
Name: NF8226_low_55
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_55 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9373288 - 9373511
Alignment:
| Q |
1 |
ttatcaaccaatatcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaaaataacaaacaacaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
9373288 |
ttatcaaccaatatcatgattagctcttatataaagagagagtctagcacttggtaatatcaaacaaacatcgagctttacaaaataacaaacaacagat |
9373387 |
T |
|
| Q |
101 |
taaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9373388 |
taaagagaaatatggcaagcaacaagtaccatgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaa |
9373487 |
T |
|
| Q |
201 |
aatcaagacatgggacgccacatc |
224 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
9373488 |
aatcaagacatgggaagccacatc |
9373511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9288740 - 9288517
Alignment:
| Q |
1 |
ttatcaaccaatatcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaaaataacaaacaacaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
9288740 |
ttatcaaccaatatcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaaaagaacaaacaacaaat |
9288641 |
T |
|
| Q |
101 |
taaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||| |||| || |
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|
| T |
9288640 |
taaagagaaatatggcaagcaacaattaccatgttcgctcaaacagttttccttctcaatctcatcctaacacctcaagaatagatcaagagttaacaaa |
9288541 |
T |
|
| Q |
201 |
aatcaagacatgggacgccacatc |
224 |
Q |
| |
|
||| ||||||||||| |||||||| |
|
|
| T |
9288540 |
aatgaagacatgggaagccacatc |
9288517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 9293274 - 9293046
Alignment:
| Q |
12 |
tatcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaa----------------aataacaaacaa |
95 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||||| |||||||||| |||||||||||| |
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|
| T |
9293274 |
tatcatgattagctcatatataaatagagagtcaagaacttggtaacatcacacaaacattaagctttacaattatcttagaagaaaaaataacaaacaa |
9293175 |
T |
|
| Q |
96 |
caaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagcta |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293174 |
caaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagcta |
9293075 |
T |
|
| Q |
196 |
accaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
9293074 |
accaaaatcaagacatgggaagccacatc |
9293046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 9305622 - 9305486
Alignment:
| Q |
88 |
acaaacaacaaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaac |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9305622 |
acaaacaacaaattaaagagaaatatggcaagcaacaattaccatgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaac |
9305523 |
T |
|
| Q |
188 |
aagagctaaccaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
9305522 |
aagagctaaccaaaatgaagacatgggaagccacatc |
9305486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 9297795 - 9297653
Alignment:
| Q |
82 |
aaaataacaaacaacaaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaa |
181 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9297795 |
aaaataacaaactacaatttaaagagaaatatggcaagcaacaagtaccatgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaa |
9297696 |
T |
|
| Q |
182 |
tagaacaagagctaaccaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9297695 |
tagaacaagagctaaccaaaatcaagacatgggaagccacatc |
9297653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 9367463 - 9367605
Alignment:
| Q |
82 |
aaaataacaaacaacaaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaa |
181 |
Q |
| |
|
|||| ||||||| | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
9367463 |
aaaagaacaaactataatttaaagagaaatatggcaagcaacaattaccatgttcgctcaaacagttttccttctcaatctcatcctaatacctcaagat |
9367562 |
T |
|
| Q |
182 |
tagaacaagagctaaccaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
9367563 |
tagaacaagagctaaccaaaattaagacatgggaagccacatc |
9367605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 9352157 - 9352015
Alignment:
| Q |
82 |
aaaataacaaacaacaaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaa |
181 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| || ||| || || ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
9352157 |
aaaataacacacaacaaattaaagacaaatatggcaaacaccaagtatcatgttcgctcaaacagttttccttctcaatcacatcccaactccacaagaa |
9352058 |
T |
|
| Q |
182 |
tagaacaagagctaaccaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
9352057 |
tagaacaagagctatgcaaaatcaagacatgggaagccacatc |
9352015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 9332429 - 9332287
Alignment:
| Q |
82 |
aaaataacaaacaacaaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaa |
181 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||| || ||| || || ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
9332429 |
aaaataacacacagcaaattaaagaaaaatatggcaaacaccaagtatcatgttcgctcaaacagttttccttctcaatcacatcccaactccacaagaa |
9332330 |
T |
|
| Q |
182 |
tagaacaagagctaaccaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
9332329 |
tagaacaagagctatgcaaaatcaagacatggaaagccacatc |
9332287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 9301980 - 9301868
Alignment:
| Q |
112 |
atggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaaaatcaagacat |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
9301980 |
atggcaagcaacaattaccatgttcgctcaaacagttttccttctcaatctcatccaaactccactagaattgaaaaagagctaaccaaaatgaagacat |
9301881 |
T |
|
| Q |
212 |
gggacgccacatc |
224 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
9301880 |
gggaagccacatc |
9301868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 9309843 - 9309981
Alignment:
| Q |
87 |
aacaaacaacaaattaaagagaaat----atggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaat |
182 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
9309843 |
aacaaacaacaaattaaggagaaattaagatgtcaagcaaa---taccatgttcgctcaaacagttttccttctcaatctcatccaagctccactagaat |
9309939 |
T |
|
| Q |
183 |
agaacaagagctaaccaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
9309940 |
tgaacaagagttaaccaaaatgaagacatgggaagccacatc |
9309981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 9348910 - 9349007
Alignment:
| Q |
127 |
taccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| | |||| | ||||| ||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
9348910 |
taccatgttcgctcaaatagttttccttctcaatctcatccaagctcctctagaattgaacaagagttaaccaaaatgaagacatgggaagccacatc |
9349007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 9356251 - 9356389
Alignment:
| Q |
87 |
aacaaacaacaaattaaagagaaat----atggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaat |
182 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||| || |||||||||||||| ||||| | |||||||||||| |
|
|
| T |
9356251 |
aacaaacaacaaattaaagagcaattaagatggcaagcaaa---taccatgttcgctcaaatagctttccttctcaatcccatccaagctccacaagaat |
9356347 |
T |
|
| Q |
183 |
agaacaagagctaaccaaaatcaagacatgggacgccacatc |
224 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| || ||||| |
|
|
| T |
9356348 |
tgaacaagatttaagaaaaatgaagacatgggaagctacatc |
9356389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 9297883 - 9297813
Alignment:
| Q |
11 |
atatcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaa |
83 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||| |||| ||||||| ||||||||||| |
|
|
| T |
9297883 |
atatcatgattagctgttatataaagagag--tcaagcacttgttaacatcacacaaacattgagctttacaa |
9297813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 9356159 - 9356227
Alignment:
| Q |
13 |
atcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttac |
81 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| ||||||||||| | || ||||||| ||||||||| |
|
|
| T |
9356159 |
atcatgaatggctcttatataaagagagagtcaggcacttggtaacaccacacaaacattgagctttac |
9356227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 9352229 - 9352170
Alignment:
| Q |
24 |
ctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaa |
83 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
9352229 |
ctcttatataaatagagattcaagaacttggtaacatcacacaaacattgagctttacaa |
9352170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 9367373 - 9367444
Alignment:
| Q |
9 |
caatatcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagcttta |
80 |
Q |
| |
|
|||||| |||| || |||||||||||| ||||||||||| ||||||||| |||| ||||| | |||||||| |
|
|
| T |
9367373 |
caatatgatgaatacctcttatataaatagagagtcaagaacttggtaacatcacacaaacttagagcttta |
9367444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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