View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8226_low_61 (Length: 218)

Name: NF8226_low_61
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8226_low_61
NF8226_low_61
[»] chr1 (8 HSPs)
chr1 (1-209)||(32248609-32248817)
chr1 (2-209)||(32242872-32243079)
chr1 (27-111)||(32242813-32242897)
chr1 (2-89)||(32253444-32253531)
chr1 (27-111)||(32253385-32253469)
chr1 (2-209)||(32253402-32253603)
chr1 (2-95)||(32242830-32242923)
chr1 (13-95)||(32248579-32248661)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 32248609 - 32248817
Alignment:
Q  1 catgtccgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32248609 catgtccgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatct 32248708  T
Q  101 tgtttcccattgttcttcctcactaggtttctgatgccctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32248709 tgtttcccattgttcttcctcactaggtttctgatgccctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtat 32248808  T
Q  201 tcttcatct 209  Q
    |||||||||    
T  32248809 tcttcatct 32248817  T

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Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 32242872 - 32243079
Alignment:
Q  2 atgtccgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatctt 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32242872 atgtccgggatgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatctt 32242971  T
Q  102 gtttcccattgttcttcctcactaggtttctgatgccctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32242972 gtttcccattgttcttcctcactaggtttctgatgccctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtatt 32243071  T
Q  202 cttcatct 209  Q
    ||||||||    
T  32243072 cttcatct 32243079  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 32242813 - 32242897
Alignment:
Q  27 tctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccatt 111  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||  |||||||    
T  32242813 tctctttcttcctgactatgtccgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccatt 32242897  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 32253444 - 32253531
Alignment:
Q  2 atgtccgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgt 89  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||| || ||||||    
T  32253444 atgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtcccgctctctttcttcttgactatgt 32253531  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 32253385 - 32253469
Alignment:
Q  27 tctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccatt 111  Q
    |||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||| |||||  |||||||    
T  32253385 tctctttcttcctgactatgtctgggatgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccatt 32253469  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 32253402 - 32253603
Alignment:
Q  2 atgtccgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatctt 101  Q
    ||||| |||| ||||||| || |  |||||||||| ||| |||||||||||| ||||||| || | ||||||||||||||| ||||||| ||||| ||||    
T  32253402 atgtctgggatgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtctt 32253501  T
Q  102 gtttcccattgt---tcttcctcactaggtttctgatgccctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgt 198  Q
    |  ||||  | |   ||||| | |||| |||         || ||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||||| |    
T  32253502 gggtcccgctctctttcttcttgactatgtt---------ctcgtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcat 32253592  T
Q  199 attcttcatct 209  Q
    |||||||||||    
T  32253593 attcttcatct 32253603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 32242830 - 32242923
Alignment:
Q  2 atgtccgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctggga 95  Q
    |||||||||||||||||| || |  |||||||||| ||| |||||||||||| ||||||| || | ||||||||||| ||| ||||||| ||||    
T  32242830 atgtccgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttctttctgactatgtccggga 32242923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 32248579 - 32248661
Alignment:
Q  13 gtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctggga 95  Q
    ||||||| || | ||||||||||| ||| | |||||||||||||||||| || | ||||||||||| ||| ||||||| ||||    
T  32248579 gtcttgggtctcgttctctttcttcctggccatgtccgggacgtcttggatcccattctctttctttctgactatgtccggga 32248661  T

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