View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_low_8 (Length: 617)
Name: NF8226_low_8
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 17 - 598
Target Start/End: Complemental strand, 12831943 - 12831363
Alignment:
| Q |
17 |
agagatccaaaacgagatgagaaacctattcggtcgaaagattacaaagaatgtaagttcatagaacttgaccctagagaagagaacgagctcatgccac |
116 |
Q |
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| T |
12831943 |
agagatccagaacgagatgagaagcctattcggtcgaaagattacaaagaatgtaagttcatagaacttgaccctagagaagagaacgagctcatgccac |
12831844 |
T |
|
| Q |
117 |
agccacatctcttctagaaattgaaggaagtagagatagctggtcccaaaaggcagcaaaaatcgacacatagttaacaattgaggaaaaaatcatttta |
216 |
Q |
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| T |
12831843 |
agccacatctcttctagaaattgaagga-gtagagatagctggtcccaaaaggcagcaaaaatcgacacatagttaacaattgaggaaaaaatcatctta |
12831745 |
T |
|
| Q |
217 |
atccaaagattaaggaacagtttggacttatttgcatgaagttcagctgatatgtctcgcagtctcacgtcgatccaaatgtagttttctcatcaattgg |
316 |
Q |
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| T |
12831744 |
gtccaaagattacggaacaatttggacttatttgcatgaagttcagctgatatgtctcgcagtctcacatcgatccaaatgtagttttctcatcaattgg |
12831645 |
T |
|
| Q |
317 |
ccattgatcacattgtatatattcgtttttgaacgatcaatgttaataatcagttgttaaattaatatacgaacaataacttcaccgnnnnnnnnnnnnn |
416 |
Q |
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||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12831644 |
ccattgatcacattgtatacattcatttttgaacgaacaatgttaataatcagttgttaaattaatatacgaacaataacttcactgttttttcttttct |
12831545 |
T |
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| Q |
417 |
gtgctaacctttactagataatttttgtttggttacacaaacccattcactatataattgaatgaatggaaacatttgttttttaatcaaaaacctaaat |
516 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12831544 |
gtgctaacctttactatataatttttttttggttacacaaaccccttcactagataattgaatgaatggaaacatttgttttttaatcaaaaacctaaat |
12831445 |
T |
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| Q |
517 |
atggacttcaattaattcttgaagtttcatttttagtcgaaaaaagaaatctgagaacccataacttccattcattgtgatc |
598 |
Q |
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| T |
12831444 |
atggacttcaattaattcttgaagtttcatttttagtcgaaaaaagaaatctgagaacccataacttccattcattgtgatc |
12831363 |
T |
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