View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8226_low_9 (Length: 605)
Name: NF8226_low_9
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 20 - 589
Target Start/End: Original strand, 32253449 - 32254018
Alignment:
| Q |
20 |
cgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgttctcgtctaagaaggtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253449 |
cgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtcccgctctctttcttcttgactatgttctcgtctaagaaggtg |
32253548 |
T |
|
| Q |
120 |
tcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgagaccgccctctact |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253549 |
tcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgagaccgccctctact |
32253648 |
T |
|
| Q |
220 |
ctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaaaccac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253649 |
ctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaaaccac |
32253748 |
T |
|
| Q |
320 |
tcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcctttgttgatgtcgtcc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253749 |
tcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggcgtcctcctctacgtccggggaaactgggcctttgttgatgtcgtcc |
32253848 |
T |
|
| Q |
420 |
ttgttgtctctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacgcatatttacatgtgattaattgagttgaaaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253849 |
ttgttgtctctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacgcatatttacatgtgattaattgagttgaaaa |
32253948 |
T |
|
| Q |
520 |
ttttataagttagtaaagtgtataatagttctaaattgcaatccgcagtcataaacaccggcatcataaa |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253949 |
ttttataagttagtaaagtgtataatagttctaaattgcaatccgcagtcataaacaccggcatcataaa |
32254018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 107 - 527
Target Start/End: Original strand, 32243012 - 32243431
Alignment:
| Q |
107 |
gtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgag |
206 |
Q |
| |
|
||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32243012 |
gtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgag |
32243111 |
T |
|
| Q |
207 |
accgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32243112 |
accgccctctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactct |
32243211 |
T |
|
| Q |
307 |
gagctgaaaccactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggccttt |
406 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
32243212 |
gagctgaaaccactcagcacactgctaccttcgttttgttcctcagatcccttctcttgttgttggcgtcctcctctacgtccggggaaactgggcctct |
32243311 |
T |
|
| Q |
407 |
gttgatgtcgtccttgttgtctctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacgcatatttacatgtgatta |
506 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
32243312 |
gttgctgtcgtccttgttgtcgctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacaca-atttacatgtgatta |
32243410 |
T |
|
| Q |
507 |
attgagttgaaaattttataa |
527 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32243411 |
attgagttgaaaattttataa |
32243431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 107 - 527
Target Start/End: Original strand, 32248750 - 32249169
Alignment:
| Q |
107 |
gtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgag |
206 |
Q |
| |
|
||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32248750 |
gtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgag |
32248849 |
T |
|
| Q |
207 |
accgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32248850 |
accgccctctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactct |
32248949 |
T |
|
| Q |
307 |
gagctgaaaccactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggccttt |
406 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
32248950 |
gagctgaaaccactcagcacactgctaccttcgttttgttcctcagatccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcctct |
32249049 |
T |
|
| Q |
407 |
gttgatgtcgtccttgttgtctctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacgcatatttacatgtgatta |
506 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
32249050 |
gttgctgtcgtccttgttgtcgctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacaca-atttacatgtgatta |
32249148 |
T |
|
| Q |
507 |
attgagttgaaaattttataa |
527 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
32249149 |
attgagttgaaaaatttataa |
32249169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 32242877 - 32242959
Alignment:
| Q |
20 |
cgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| || |||||| |
|
|
| T |
32242877 |
cgggatgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgt |
32242959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 32248615 - 32248697
Alignment:
| Q |
20 |
cgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt |
102 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| || |||||| |
|
|
| T |
32248615 |
cgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgt |
32248697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 32242813 - 32242875
Alignment:
| Q |
40 |
tctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt |
102 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |
|
|
| T |
32242813 |
tctctttcttcctgactatgtccgggacgtcttgggtctcgctctctttcttcctggctatgt |
32242875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 32253385 - 32253447
Alignment:
| Q |
40 |
tctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
32253385 |
tctctttcttcctgactatgtctgggatgtcttgggtctcgctctctttcttcctggctatgt |
32253447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 32253408 - 32253489
Alignment:
| Q |
21 |
gggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt |
102 |
Q |
| |
|
|||||||||||| || | |||||||||||||| |||||||||||||||||||| || | ||||||||||| ||||||||| |
|
|
| T |
32253408 |
gggatgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgt |
32253489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 32242855 - 32242917
Alignment:
| Q |
40 |
tctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || | |||||||||| ||||||||| |
|
|
| T |
32242855 |
tctctttcttcctggctatgtccgggatgtcttggatcccattctctttctttctgactatgt |
32242917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 32248578 - 32248655
Alignment:
| Q |
25 |
tgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt |
102 |
Q |
| |
|
|||||||| || | ||||||||||||||| | |||||||||| ||||||| || | |||||||||| ||||||||| |
|
|
| T |
32248578 |
tgtcttgggtctcgttctctttcttcctggccatgtccgggacgtcttggatcccattctctttctttctgactatgt |
32248655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University