View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8227_low_2 (Length: 355)
Name: NF8227_low_2
Description: NF8227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8227_low_2 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 44237853 - 44237514
Alignment:
| Q |
18 |
gtttttccttcttactacagagttggacttgatattccaacaattgaagttcgatataacaatctgaaaattgatgctgaagcgtttgtgggaagtagag |
117 |
Q |
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| T |
44237853 |
gtttttccttcttactacagagttggacttgatattccaacaattgaagttcgatataacaatctgaaaattgatgctgaagcgtttgtgggaagtagag |
44237754 |
T |
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| Q |
118 |
ctttgcctagtttcatcaatgctgctactaatgttatagaggtaaggagtgnnnnnnnn--ttatagtacttcataaaatgactgaagttttttctttct |
215 |
Q |
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| T |
44237753 |
ctttgcctagtttcatcaatgctgctactaatgttatagaggtaaggagtgaaaaaaaaaattatagtacttcataaaatgactgaagttttttctttct |
44237654 |
T |
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| Q |
216 |
tcgatctgttttgcttttgcatttaagtctcacaagtaaccaaaatatatctttctttgtttcagggtatattgaattttcttcatatcatcccaaccaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44237653 |
tcgatctgttttgcttttgcatttaagtctcacaagtaaccaaaatatatctttctttgtttcagggtgtattgaattttcttcatatcatcccaaccaa |
44237554 |
T |
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| Q |
316 |
aaagaggcatgtggcaattcttaaagatgttagcggaatt |
355 |
Q |
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| T |
44237553 |
aaagaggcatgtggcaattcttaaagatgttagcggaatt |
44237514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 44227060 - 44226917
Alignment:
| Q |
18 |
gtttttccttcttactacagagttggacttgatattccaacaattgaagttcgatataacaatctgaaaattgatgctgaagcgtttgtgggaagtagag |
117 |
Q |
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| T |
44227060 |
gttttttcttctcattatagagttggacttgatattccaacaattgaagttcgataccagaacctgaaaattgatgctgaagcgtttgtgggaagtagag |
44226961 |
T |
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| Q |
118 |
ctttgcctagtttcatcaatgctgctactaatgttatagaggta |
161 |
Q |
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| T |
44226960 |
ctttgcctagtttcattaatgctgctactaatgttgtagaggta |
44226917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 219 - 355
Target Start/End: Complemental strand, 44214704 - 44214566
Alignment:
| Q |
219 |
atctgttttgcttttgcatttaagtctcacaagtaaccaaaatatat--ctttctttgtttcagggtatattgaattttcttcatatcatcccaaccaaa |
316 |
Q |
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| T |
44214704 |
atctgttttgtttttgcagttgagtctcacaagtaaaaaaaatatatatctttttttgtttcagggtgtattcaattttcttcatatcatcccaaccaaa |
44214605 |
T |
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| Q |
317 |
aagaggcatgtggcaattcttaaagatgttagcggaatt |
355 |
Q |
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| T |
44214604 |
aagaggcatgtggcaattcttagagatgttagtggaatt |
44214566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 44214896 - 44214760
Alignment:
| Q |
25 |
cttcttactacagagttggacttgatattccaacaattgaagttcgatataacaatctgaaaattgatgctgaagcgtttgtgggaagtagagctttgcc |
124 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
44214896 |
cttcttattatagagttggacttgatattccaacaattgaagttcgataccagaacctgaaaattgatgccgaagcttttgtgggaagtcgagctttgcc |
44214797 |
T |
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| Q |
125 |
tagtttcatcaatgctgctactaatgttatagaggta |
161 |
Q |
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| T |
44214796 |
tagtttcattaacgctgctactaatgttgtcgaggta |
44214760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 44226796 - 44226717
Alignment:
| Q |
275 |
tttcagggtatattgaattttcttcatatcatcccaaccaaaaagaggcatgtggcaattcttaaagatgttagcggaat |
354 |
Q |
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| T |
44226796 |
tttcagggggtattgaattttcttcatatcatcccaaccaaaaagaggcatgtgtcaattcttaaagatgttagcggaat |
44226717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 39593694 - 39593656
Alignment:
| Q |
34 |
acagagttggacttgatattccaacaattgaagttcgat |
72 |
Q |
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| T |
39593694 |
acagagttggagttgatattcctacaattgaagttcgat |
39593656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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