View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8227_low_5 (Length: 249)
Name: NF8227_low_5
Description: NF8227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8227_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 44237234 - 44237468
Alignment:
| Q |
15 |
acatcatgttggctgatataagctgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccagttagctgtacgaattaag |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44237234 |
acatcatgttggctgatataagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccagttagctgtacgaattaag |
44237333 |
T |
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| Q |
115 |
aattcggcatccaaattaaataattttagatataaagtttaccacctttgagctactaatgagttatatgattttatttacctgaagacttggatcaagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44237334 |
aattcggcatccaaattaaataattttagatataaagtttaccacctttgagctactaatgagttatatgattttatttacctgaagacttggatcaagc |
44237433 |
T |
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| Q |
215 |
tttccagataaggctagcagaagcgtggtctttcc |
249 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
44237434 |
tttccagataaggctaacagaagcgtggtctttcc |
44237468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 44226436 - 44226670
Alignment:
| Q |
15 |
acatcatgttggctgatataagctgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccagttagctgtacgaattaag |
114 |
Q |
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|||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44226436 |
acatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaattaag |
44226535 |
T |
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| Q |
115 |
aattcggcatccaaattaaataattttagatataaagtttaccacctttgagctactaatgagttatatgattttatttacctgaagacttggatcaagc |
214 |
Q |
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| T |
44226536 |
cattcggcatccaagttagataattttagatataaagtttaccacctttgatctacaagtgagttatatgattttatttacctggagacttggatcaagc |
44226635 |
T |
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| Q |
215 |
tttccagataaggctagcagaagcgtggtctttcc |
249 |
Q |
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| T |
44226636 |
tttccagataaggctaaaagaagtgtggtctttcc |
44226670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 44214266 - 44214406
Alignment:
| Q |
15 |
acatcatgttggctgatataagctgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccagttagctgtacgaattaag |
114 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |||||| |||||| ||||| || |||||| |
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| T |
44214266 |
acatcatgctggctgatataagcagcagttctttgaggtacaaactcattcagtccgtgtccattgtaggtcacattcccagatagctatataaattaaa |
44214365 |
T |
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| Q |
115 |
aattcggcatccaaattaaataattttagatataaagtttac |
156 |
Q |
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| T |
44214366 |
catt-ggtatcaaaattatgtaattttaaatattaagtttac |
44214406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 2901798 - 2901879
Alignment:
| Q |
15 |
acatcatgttggctgatataagctgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccag |
96 |
Q |
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||||||||||| || ||||| || |||||||||||||||||||| || | || ||||| ||||| |||||||| ||||||| |
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| T |
2901798 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag |
2901879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 2873027 - 2872954
Alignment:
| Q |
15 |
acatcatgttggctgatataagctgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcac |
88 |
Q |
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| T |
2873027 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccattccatatccattataagtcac |
2872954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 39578193 - 39578263
Alignment:
| Q |
27 |
ctgatataagctgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccagt |
97 |
Q |
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|||| |||||| ||||||||||||||||||||||| |||| |||| || ||||||||||| ||||||| |
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| T |
39578193 |
ctgacataagcagcagttctttgaggtacaaactcattcatctcatgaccgttgtaagtcaccttcccagt |
39578263 |
T |
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