View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8227_low_8 (Length: 229)
Name: NF8227_low_8
Description: NF8227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8227_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 24098531 - 24098761
Alignment:
| Q |
3 |
agttgatttcatgacctcaaaactttttgaaattgttaaaaactgttggtag----tagatagatagataaaattaaagttttataaaatacttcttccg |
98 |
Q |
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| T |
24098531 |
agttgatttcatgacctcaaaactttttgaaattgttaaaaactgttggtagcagatagatagatagatagaattaatgttttatgaaatacttcttcca |
24098630 |
T |
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| Q |
99 |
atcttaaatataaaggaaagttaaatcaacaaaaattgatatatttaatctaaaatttgaactaaatacactcacgtttattggcgtaatgtatgtttat |
198 |
Q |
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| T |
24098631 |
gtcttaaatataaacaaaagttaaatcaacaaaaattgatatatttagtctaaaatttgaactaaatacactcacgtttgttggcgtaatatatgtttat |
24098730 |
T |
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| Q |
199 |
atttgagatcggatgaaaaataattcaaagc |
229 |
Q |
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| T |
24098731 |
atttgagaccggatgaaaaataattcaaagc |
24098761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 6834272 - 6834210
Alignment:
| Q |
104 |
aaatataaaggaaagttaaatcaacaaaaattgatatatttaatctaaaatttgaactaaata |
166 |
Q |
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| T |
6834272 |
aaatataaagaaaagttgaatcaacaaaaattgatatgtttgatataaaatttgatctaaata |
6834210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 2981255 - 2981215
Alignment:
| Q |
106 |
atataaag-gaaagttaaatcaacaaaaattgatatattta |
145 |
Q |
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| T |
2981255 |
atataaagagaaagttaaatcaacaaaaattgatgtattta |
2981215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 9065732 - 9065796
Alignment:
| Q |
104 |
aaatataaaggaaagttaaatcaacaaaaattgatatatttaatctaaaatttgaactaaataca |
168 |
Q |
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||||||||| |||||||| ||||||||||||||| ||||| |||||||||| || |||||||| |
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| T |
9065732 |
aaatataaacaaaagttaagtcaacaaaaattgatgtatttcgtctaaaatttaaattaaataca |
9065796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 46330955 - 46330915
Alignment:
| Q |
119 |
ttaaatcaacaaaaattgatatatttaatctaaaatttgaa |
159 |
Q |
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| T |
46330955 |
ttaaatcaacaaaaattgatatatttagtctaaattttgaa |
46330915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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