View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_high_10 (Length: 419)
Name: NF8228_high_10
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 38943754 - 38943515
Alignment:
| Q |
20 |
ttgagagacttaattttggcaaaattaattcacgtcatgtgttttgaatttcatatttgttagtgtagataagtgataaaataatgctgtttttcatatt |
119 |
Q |
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| T |
38943754 |
ttgagagatttcattttggcaaatctaatccacgtcatgtattttgaatttcatatttgttagtgtagataagtgataaaataatgttgcttttcatatt |
38943655 |
T |
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| Q |
120 |
ttgaatttcaataactctttcaaaagagaatagccaaattgtttactgttgaaacaccaacttagtgagttcggttttcactcaattgtttaacttggtt |
219 |
Q |
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| T |
38943654 |
ttgaatttcaataactctttcaaaagagaatagccaaattgttaactgttgaaacaccaatttagtgagttcagttttcactcaattgtttaacttggtt |
38943555 |
T |
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| Q |
220 |
ttgtcatattcaattgccttttttccgcaaaaatctgttgt |
260 |
Q |
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| T |
38943554 |
ttgtcagattcaattgcct-ttttctgcaaaaatctgttgt |
38943515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 38943330 - 38943237
Alignment:
| Q |
259 |
gttgcagataaggcatttgtctataatgtgatgaatataactaggctcttgatcaatcctgacattcaagaggctcttcaattgaagaatgggt |
352 |
Q |
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| T |
38943330 |
gttgcatataaggcatttgtgcagaatgtgatgaatataactaggctcttgatcaatcctgacattccagaggctcttcaattgaagaatgggt |
38943237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 38943191 - 38943145
Alignment:
| Q |
358 |
ttttctgatgtaaatgtcattgtatatcaattgttgtgacgtgtgtg |
404 |
Q |
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| T |
38943191 |
ttttctgatgtagatgttactgtatatcaattgttgtgacgcgtgtg |
38943145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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