View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8228_high_21 (Length: 322)
Name: NF8228_high_21
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_high_21 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 437733 - 437430
Alignment:
| Q |
1 |
caatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaattagaaaatttttattgcaatttatatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
437733 |
caatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaactagaaaatttttattgcaatttatatata |
437634 |
T |
|
| Q |
101 |
gttggacaagggaattgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacattttggcatcag |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
437633 |
gttggacaagggaatcgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacattttggcatcag |
437534 |
T |
|
| Q |
201 |
ataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggggaatggttttggaaaagcaacccaaccatgtgaccaacaataacga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
437533 |
ataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggggaatggttttggaaaagcaacccaaccatgtgaccaccaataacga |
437434 |
T |
|
| Q |
301 |
tggt |
304 |
Q |
| |
|
|||| |
|
|
| T |
437433 |
tggt |
437430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 28609171 - 28609472
Alignment:
| Q |
1 |
caatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaattagaaaatttttattgcaatttatatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||||| ||||||| || |||| ||||||| ||| |
|
|
| T |
28609171 |
caatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacata |
28609270 |
T |
|
| Q |
101 |
gttggacaagggaattgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacattttggcatcag |
200 |
Q |
| |
|
|||||||| || ||| ||||||||| ||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
28609271 |
gttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaa |
28609370 |
T |
|
| Q |
201 |
ataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggggaatggttttggaaaagcaacccaaccatgtgaccaacaataacga |
300 |
Q |
| |
|
| ||||||| |||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||| | ||||||| || |
|
|
| T |
28609371 |
acaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggaggaatggttttgggaaagcaaccaaaccaggtgaacgacaataatga |
28609470 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
|
|| |
|
|
| T |
28609471 |
tg |
28609472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 13660542 - 13660845
Alignment:
| Q |
1 |
caatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaattagaaaatttttattgcaatttatatata |
100 |
Q |
| |
|
||||||||||||||| ||||| || ||| ||||||||||| |||||||||||||||||| ||||||||| ||||| || ||| || ||||||| ||| |
|
|
| T |
13660542 |
caatgattctatatcatattcggaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagacaaatttggttatgatttatacata |
13660641 |
T |
|
| Q |
101 |
gttggacaagggaattgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacattttggcatcag |
200 |
Q |
| |
|
|||||||||||| || ||| || ||| | ||||| || ||||||||| ||||||||||||||||||||||||||| | ||||| || ||||||||| |
|
|
| T |
13660642 |
gttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaa |
13660741 |
T |
|
| Q |
201 |
ataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggggaatggttttggaaaagcaacccaaccatgtgaccaacaataacga |
300 |
Q |
| |
|
| |||||| |||| | || |||||||| |||||||||||||||||||| || |||||||||| || ||| ||||| ||||||||| ||| ||||| || |
|
|
| T |
13660742 |
acaattttagttcgggttcgtctgtgctcgttgtgcaacaatatgggtacggaggaatggtttcgggaaatcaacctaaccatgtgtccactaataaaga |
13660841 |
T |
|
| Q |
301 |
tggt |
304 |
Q |
| |
|
|||| |
|
|
| T |
13660842 |
tggt |
13660845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 13653042 - 13653345
Alignment:
| Q |
1 |
caatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaattagaaaatttttattgcaatttatatata |
100 |
Q |
| |
|
|||||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||| ||| |||| ||||| || ||| ||| ||||||| ||| |
|
|
| T |
13653042 |
caatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgatgatttagacaaatttggttgtgatttatacata |
13653141 |
T |
|
| Q |
101 |
gttggacaagggaattgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacattttggcatcag |
200 |
Q |
| |
|
|||||||||||| || ||| || ||| | ||||| || ||||||||| ||||||||||||||||||||||||||| | ||||| || ||||||||| |
|
|
| T |
13653142 |
gttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaa |
13653241 |
T |
|
| Q |
201 |
ataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggggaatggttttggaaaagcaacccaaccatgtgaccaacaataacga |
300 |
Q |
| |
|
| |||||| |||| | ||||| ||| |||||||||||||||||||||| || ||||| |||| || ||| ||||| || |||||| ||| ||||| || |
|
|
| T |
13653242 |
acaattttagttcgggttcatcagtgttagttgtgcaacaatatgggtacggaggaatagtttcgggaaatcaacctaatcatgtgtccactaataaaga |
13653341 |
T |
|
| Q |
301 |
tggt |
304 |
Q |
| |
|
|||| |
|
|
| T |
13653342 |
tggt |
13653345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University