View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8228_high_23 (Length: 304)
Name: NF8228_high_23
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 152 - 285
Target Start/End: Complemental strand, 24454813 - 24454680
Alignment:
| Q |
152 |
ttggaaccgtgtgtgttccaatacaaatgaattagttgttttgaaagtatcaatcaataaatgctcatttttatagagcctcccatcatcacattacact |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24454813 |
ttggaaccgtgtgtgttccaatacaaatgaattagttgttttgaaagtatcaatcaataaatgctcatttttatagagcctcccatcatcacattacact |
24454714 |
T |
|
| Q |
252 |
ataagttatatggaaattcggtgcataggaaaaa |
285 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |
|
|
| T |
24454713 |
ataagctatatgggaattcggtgcataggaaaaa |
24454680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 124 - 283
Target Start/End: Original strand, 27541354 - 27541513
Alignment:
| Q |
124 |
gtagtgattctgatttcactnnnnnnnnttggaaccgtgtgtgttccaatacaaatgaattagttgttttgaaagtatcaatcaataaatgctcattttt |
223 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27541354 |
gtagtgattctgatttcactaaaaaaaattgaaacggtgtatgttccaatacaaatgaattagttgtgttgaaagtatcaatcaataaatgctcattttt |
27541453 |
T |
|
| Q |
224 |
atagagcctcccatcatcacattacactataagttatatggaaattcggtgcataggaaa |
283 |
Q |
| |
|
|||| ||||||| | |||||||||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
27541454 |
caagagtctcccataagcacattacactataagctatatgggaatttggtgcataggaaa |
27541513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27541227 - 27541275
Alignment:
| Q |
1 |
cggaagtggagatctggacgggtgag-ttttttgttgatgaacagcgac |
48 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27541227 |
cggaagtggaaatctggacgggtgagtttttttgttgatgaacagcgac |
27541275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University