View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_high_24 (Length: 292)
Name: NF8228_high_24
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 36289838 - 36290098
Alignment:
| Q |
19 |
agacgggagctctataaataatgcagaactttcactcttcaattttagtagcattataattgcaacaaacaatttctcagaagaaaacaagcttggacaa |
118 |
Q |
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| T |
36289838 |
agacgggagctctataaataatgcagaactttcactcttcaattttagtagcattataattgcaacaaacaatttctcagaagaaaacaagcttggacaa |
36289937 |
T |
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| Q |
119 |
gggggatttggtcctgtctacaaggtaaacatgtagctgttaaacttacctttctgtaatatgttaaaatatatatttcttcccaaatgtaacactcatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289938 |
gggggatttggtcctgtctacaaggtaaacatgtaactgttaaacttacctttctgtaatatgttaaaatatatatttcttcccaaatgtaacactcatt |
36290037 |
T |
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| Q |
219 |
tttaatttggtcctgattcaaaatgtaattatattttcagattattatggtcaatgtatct |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290038 |
tttaatttggtcctgattcaaaatgtaattatattttcagattattatggtcaatgtatct |
36290098 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 21935833 - 21935876
Alignment:
| Q |
103 |
aaacaagcttggacaagggggatttggtcctgtctacaaggtaa |
146 |
Q |
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| T |
21935833 |
aaacaagcttggacaaggtgggtttggtcctgtctacaaggtaa |
21935876 |
T |
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