View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_high_39 (Length: 226)
Name: NF8228_high_39
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 3098611 - 3098418
Alignment:
| Q |
17 |
catttattactctttggttttaaagttaaaaatctagacggtgactgctttgtatttgcagctgctaaatgattgttggaaagcatttagaggtgaaatt |
116 |
Q |
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| T |
3098611 |
catttattactctttggttttaaagttaaaaatctagacggtgactgctttgtatt-gcagctgctaaatgattgttggaaagcatttagaggtgaaatt |
3098513 |
T |
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| Q |
117 |
agtacacaatcaaatcttatctttacaaggaagccatcctctttactcatgctatggacaaaatttgatgtgtttttgaaaaataataacacagg |
211 |
Q |
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| T |
3098512 |
agtacacaatcaaatcttatctttacaaggaagcgatcctctttactcatgctatggacaaaatttgatgtgtttttgaaaaataataacacagg |
3098418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 3092494 - 3092335
Alignment:
| Q |
45 |
aaaatctagacggtgactgctttgtatttgcagctgctaaatgattgttggaaagcatttagaggtgaaattagtacacaatcaaatcttatctttacaa |
144 |
Q |
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|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
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| T |
3092494 |
aaaatctagatggtgattgctttgtttttgcagctgctaaatgattgttggaaagcattcagaagtgaa---agtacacaatcaaatcttatctttacaa |
3092398 |
T |
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| Q |
145 |
ggaagccatcctctttactcatgctatggacaaaatttgatgtgtttttgaaaaataataaca |
207 |
Q |
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|||||| |||||||||| ||| |||||||| | ||| ||| ||||||||||||||||| |
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| T |
3092397 |
ggaagcgatcctctttagtcacaatatggacagaggatgaactgtctttgaaaaataataaca |
3092335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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