View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_high_6 (Length: 490)
Name: NF8228_high_6
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 45302623 - 45303096
Alignment:
| Q |
1 |
tcacagggagggaccctttcatcaaatagattcgcgaaacgtgatcagtactataatgtttcccatgcaaactatatattcattcacaccgcaaacccaa |
100 |
Q |
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| T |
45302623 |
tcacagggagggaccatttcatcaaatagattcgcaaaacgtgatcagtactataatgtttcccatgcaaactatatattcattcacaccgcaaacccaa |
45302722 |
T |
|
| Q |
101 |
tattttgagcggatttaaaccccgtaatcggtttcttgggtgtgaaattgcttgagttctttgacaattgcaccactccagccaaatctggattcaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45302723 |
tattttgagcggatttaaaccccgtaatcggtttctcgggtgtgaaattgcttgagttctttgacaattgcaccactccagccaaatctggattcgaaaa |
45302822 |
T |
|
| Q |
201 |
atgacgaaaaatacagcattcccgtgatctataattgagtcgggaacnnnnnnntgttattccaaatgagaggtgaaatctaagtgaggcccaactaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302823 |
atgacgaaaaatacagcattcccgtgatctataattgagtcgggaacaaaaaaatgttattccaaatgagaggtgaaatctaagtgaggcccaactaaga |
45302922 |
T |
|
| Q |
301 |
atctttttagttgagtgagtatggtggtttgaactttgaagcaatgtttaggttgttgcctttccttagtgccagccttcagctctaacgtcagtgtaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45302923 |
atctttttagttgagtgagtatggtggtttgaactttgaagcaatgtttaggttgttgcctttccttagtgccagccttcagctctaatgtcagtgtaaa |
45303022 |
T |
|
| Q |
401 |
aaatttaaaccgtcaatatatcaggaatatacatgtgtgaatttgtaatcccttatgaggaaagtctagataat |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303023 |
aaatttaaaccgtcaatatatcaggaatatacatgtgtgaatttgtaatcccttatgaggaaagtctagataat |
45303096 |
T |
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