View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_high_7 (Length: 459)
Name: NF8228_high_7
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 49035846 - 49035429
Alignment:
| Q |
17 |
gatatatctgaaacaaattcgagaaattactaaagattaagtaagaaaaaggaacatgcctgaggtgtaccaataagtggaaccattatctctggtagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49035846 |
gatatatctgaaacaaattcgagaaattactaaagattaagtaagaaaaaggaacatgcctgaggtgtaccaataagtggaaccattatctctggtagaa |
49035747 |
T |
|
| Q |
117 |
ctacaatactattgcgactcactgaaacagcggcttggaagattgcacgagcctgcatctcagtcaattctggatatgatattcccagcctgttcacatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49035746 |
ctacaatactattgcgactcactgaaacagcggcttggaagattgcacgagcctgcatctcagtcaattctggatatgatattcccagcctgttcacatg |
49035647 |
T |
|
| Q |
217 |
atttcaaattgtcaaacatcagtaaatcataggataccgagtttgattcctactgataaattatgaacttggaatttccaaactaaacatcagtcatgtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49035646 |
atttcaaattgtcaaacatcagtaaatcataggataccgagtttgattcctactgataaattatgaacttggaatttccaaactaaacatcagtcatgtg |
49035547 |
T |
|
| Q |
317 |
atagttatttgttacgcgcaagcatcatattaaaaggacgacaaacctgcagccgcgaaaaccaagcatgggattaacttcagagagtttttcaatccta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49035546 |
atagttatttgttacgcgcaagcatcatattaaaaggaggacaaacctgcagccgcgaaaaccaagcatgggattaacttcagagagtttttcaatccta |
49035447 |
T |
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| Q |
417 |
gagaatatctctgcttct |
434 |
Q |
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|||||||| ||||||||| |
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| T |
49035446 |
gagaatatttctgcttct |
49035429 |
T |
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