View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_10 (Length: 453)
Name: NF8228_low_10
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 48699305 - 48698877
Alignment:
| Q |
19 |
caatagtccaagtaattcaatatggagacgaattcgcgtcttggtaatgatatttgatcaaaaagacttaaactctcacacattcaagaagagtggaaat |
118 |
Q |
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| T |
48699305 |
caatagtccaagtaattcaatatggagacgaattcgcgtcttggtaatgatatttgatcaaagagacttaaactctcacacattcaagaagagtggaaat |
48699206 |
T |
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| Q |
119 |
aaacatgaaagcagtaatagtcctcatcatgatgatttaggtgcagttgaggcctctccaggtacacattgtccgcctagtccatctagtcaaactgaat |
218 |
Q |
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| T |
48699205 |
aaacatgaaagcagtaatagtcctcatcatgatgatttcggtgcagttgaggcctctccaggtacacattgtccgcctagtccatctagtcaaactgaat |
48699106 |
T |
|
| Q |
219 |
caaacgtttccttgaatggcgattttagtccaaacacggaattggatgttgtacaaattactaatcaggaagattcccctgtgaataactgtgaaattga |
318 |
Q |
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| T |
48699105 |
caaacgtttccttgaatggcgattttagtccaaacacggaattggatgttgtacaaattactaatcaggaagtttcccctgtgaacaactgtgaaattga |
48699006 |
T |
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| Q |
319 |
cctctaagcaacttgatatcatctacgattgtaacatcaagctcctaataattgtattgattcaagattaatattatgtataagttgtgatagcaacaaa |
418 |
Q |
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| T |
48699005 |
cctctaagcaacttgatatcatctacgattgtaacatcaagctcctaataattgtattgattcaagattaatattatgtataagttgtgatagc-acaaa |
48698907 |
T |
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| Q |
419 |
gatatagaaattggccctctctctgctact |
448 |
Q |
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| T |
48698906 |
gatatagaaattggccctctctttgctact |
48698877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 48710774 - 48710394
Alignment:
| Q |
18 |
acaatagtccaagtaattcaatatggagacgaattcgcgtcttggtaatgatatttgatcaaaaagacttaaactctcacacattcaagaagagtggaaa |
117 |
Q |
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|||||| |||||||||||||||||||||||||||| ||| || | | ||| |||||||||| |||||| | ||||||||||||||| | | ||| |
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| T |
48710774 |
acaataatccaagtaattcaatatggagacgaattgaagtcgtgtttaggatgtttgatcaaagagacttgagtagtcacacattcaagaaaacagaaaa |
48710675 |
T |
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| Q |
118 |
taaacatgaaagcagtaatagtcct---catcatgatgatttaggtgcagttgaggcctctccaggtacacattgtccgcctagtccatctagtcaaact |
214 |
Q |
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|| | ||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||||| |||| || ||| |||||||||| |||||||||| |
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| T |
48710674 |
tataaatgaaagcagtaataatccttatcatcatgatgatttaggtgctgttgaggtctctccaggcacaccttatccacctagtccatttagtcaaact |
48710575 |
T |
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| Q |
215 |
gaatcaaacgtttccttgaatggcgattttagtccaaacacggaattggatgttgtacaaattactaatcaggaagattcccctgtgaataactgtgaaa |
314 |
Q |
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| T |
48710574 |
gaatcaaatgtttccttctatggagattttagtcaaaacatagatatggatgtcatgcaaattactaatccagaagtttcccctgtgaacaactgtgaaa |
48710475 |
T |
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| Q |
315 |
ttgacctctaagcaacttgatatcatctacgattgtaacatcaagctcctaataattgtattgattcaagattaatattat |
395 |
Q |
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|| || | ||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
48710474 |
ttaactcccaagcaacatgagatcatctataattgtaacatcaagctcctaattattgtattgattcaagattaattttat |
48710394 |
T |
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