View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_13 (Length: 394)
Name: NF8228_low_13
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 4266220 - 4266070
Alignment:
| Q |
226 |
tacactatatccgaacaagtatattcccatctttacaaatatttgaggccccataagttgaagcctaactccataaaattggttgctccggccaatgacc |
325 |
Q |
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| T |
4266220 |
tacactatatccgaacaagtatattcccatctttacaaatatttgaggtcccataagttgaagcctaactccataaaattggttgctccggccaatgacc |
4266121 |
T |
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| Q |
326 |
gccttgatagtatttctttattatattggtttctacactatctcatacata |
376 |
Q |
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| T |
4266120 |
gccttgatagtatttctttattatattggtttctacactatctcatacata |
4266070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 4266408 - 4266315
Alignment:
| Q |
108 |
atggtggttgacgtttgaaccccgagccttacatatattatgtattttctatacttgttctcatattaatttcaaaacaacggctaaaggtgag |
201 |
Q |
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| T |
4266408 |
atggtggctggcgtttaaactccgagccttacatatattatatattgtctatacttgttctcatattaatttcaaaacaactactaaagatgag |
4266315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 4266290 - 4266259
Alignment:
| Q |
157 |
tatacttgttctcatattaatttcaaaacaac |
188 |
Q |
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| T |
4266290 |
tatacttgttctcatattaatttcaaaacaac |
4266259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 44694747 - 44694707
Alignment:
| Q |
120 |
gtttgaaccccgagccttacatatattatgtattttctata |
160 |
Q |
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| T |
44694747 |
gtttgaaccccgagccttgcatatattatgcattgtctata |
44694707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 50668399 - 50668366
Alignment:
| Q |
120 |
gtttgaaccccgagccttacatatattatgtatt |
153 |
Q |
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| T |
50668399 |
gtttgaaccccgaaccttacatatattatgtatt |
50668366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 42313499 - 42313467
Alignment:
| Q |
121 |
tttgaaccccgagccttacatatattatgtatt |
153 |
Q |
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| T |
42313499 |
tttgaaccccaagccttacatatattatgtatt |
42313467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 12459732 - 12459772
Alignment:
| Q |
109 |
tggtggttgacgtttgaaccccgagccttacatatattatg |
149 |
Q |
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| T |
12459732 |
tggtggctgaagtttgaaccccgaaccttacatatattatg |
12459772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 17755179 - 17755147
Alignment:
| Q |
121 |
tttgaaccccgagccttacatatattatgtatt |
153 |
Q |
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| T |
17755179 |
tttgaaccccgaaccttacatatattatgtatt |
17755147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 19056499 - 19056467
Alignment:
| Q |
121 |
tttgaaccccgagccttacatatattatgtatt |
153 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
19056499 |
tttgaaccccgaaccttacatatattatgtatt |
19056467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 51067897 - 51067929
Alignment:
| Q |
121 |
tttgaaccccgagccttacatatattatgtatt |
153 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
51067897 |
tttgaaccccgagccttgcatatattatgtatt |
51067929 |
T |
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