View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_15 (Length: 381)
Name: NF8228_low_15
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 44286431 - 44286786
Alignment:
| Q |
1 |
gcaaatcttcagcagcatgaggatccttcaaaata---ataataacaataataatgtacttgttattacttagagtcgaacatgaaggaaacaaaaattg |
97 |
Q |
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| T |
44286431 |
gcaaatcttcagcagcatgaggatccttcaaaataataataataataataataatgtacttgttattacttagagtcaaacatgaaggaaacaaaaattg |
44286530 |
T |
|
| Q |
98 |
taagaaagagggaaaagaaaattaccatatgaataacctgagaacaaaagttggcaataagaggaatgggaaaatggaaacgaagggaacgttgcagaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286531 |
taagaaagagggaaaagaaaattaccatatgaataacctgagaagaaaagttggcaataagaggaatgggaaaatggaaacgaagggaacgttgcagaag |
44286630 |
T |
|
| Q |
198 |
agagaaaatggttggggg----------tcaattatgatcgaagaaatttcaaaggggaatttgatttctggtagaaactaaactcctcttgcgttgcgt |
287 |
Q |
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| T |
44286631 |
agagaaaagggttgggggtgtgaaataatgaattatgatcgaagaaatttcaaaggggaatttgatttctggtagaaactaaactcttcttgcgttgcgt |
44286730 |
T |
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| Q |
288 |
tccaactggagtggtagcggtgctttcctcacttcccttttctaccaacaaatttt |
343 |
Q |
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| T |
44286731 |
tccaactgtagtggtagcggtgctttcctcacttccctttttcaccaacaaatttt |
44286786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 44069582 - 44069219
Alignment:
| Q |
1 |
gcaaatcttcagcagcatgaggatccttcaaaataataataacaataataatgtacttgttattacttagagtcgaacatgaaggaaacaaaaattgtaa |
100 |
Q |
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| T |
44069582 |
gcaaatcttcagcagcatgaggatccttcaaaataataataacaataataatgtacttgttattacttagagtcgaacatgaaggaaacaaaaattgtaa |
44069483 |
T |
|
| Q |
101 |
gaaagagggaaaagaaaattaccatatgaataacctgagaacaaaagttggcaataagaggaatgggaaaatggaaacgaagggaacgttgcagaagaga |
200 |
Q |
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| T |
44069482 |
gaaagagggaaaagaaaattaccatatgaataacctgagaacaaaagttggcaataagaggaatgagaaaatggaaacgaag-----cttgcagaagcga |
44069388 |
T |
|
| Q |
201 |
gaaaatggttgggggt---------caat---------tatgatcgaagaaatttcaaaggggaatttgatttctggtagaaactaaactcctcttgcgt |
282 |
Q |
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||||| |||||||||| ||| ||||| |||||||||| || |||||||||||||||| |||||||||||||| || | |
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| T |
44069387 |
gaaaagggttgggggtgtgaaagtgaaatggataatgaaatgatggaagaaatttgaatagggaatttgatttctgctagaaactaaactcttc-----t |
44069293 |
T |
|
| Q |
283 |
tgcgttccaactggagtggtagcggtgctttcctcacttcccttttctaccaac-aaattttactgtaactggtgt |
357 |
Q |
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| T |
44069292 |
tgcgttccaactg--tctgtagcggtgctttcctcacttcccttttctaccaactaaattttactgtaactggtgt |
44069219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44084217 - 44084285
Alignment:
| Q |
1 |
gcaaatcttcagcagcatgaggatccttcaa---aataataataacaataataatgtacttgttattac |
66 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
44084217 |
gcaaatcttcagcagcatgaggatccttcaaaataataataataataataataatgtacttgttattac |
44084285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16443203 - 16443135
Alignment:
| Q |
1 |
gcaaatcttcagcagcatgaggatccttcaaaataata---ataacaataataatgtacttgttattac |
66 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
16443203 |
gcaaatcttcagcagcatgaggatccttcaaaataataataataataataataatgtacttgttattac |
16443135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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