View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_16 (Length: 372)
Name: NF8228_low_16
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 33094453 - 33094105
Alignment:
| Q |
12 |
gagatgaatgagagtgagaagtgagaa------agagagttgtgtaaagtgaggtttggaaaagtgacggagaagtgagtgagatataaagagaaacnnn |
105 |
Q |
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| T |
33094453 |
gagatgaatgagagtgagaagtgagaagtgagaagagagttgtgtaaagtgaggtttggaaaagtgatggagaagagagtgagatataaagagaaacttt |
33094354 |
T |
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| Q |
106 |
nnnnnggttaccgttgtatagtgatgaatgaattattgatgtatgtactagcaagcgtgtataaggcaagggggattacgtgtgaattatgagggggtta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
33094353 |
tttttggttaccgttgtatagtgatgaatgaattattgatgtatgtactagcaagcgtgtataaggcaagggggattacgtgtgaatgatgaggggatta |
33094254 |
T |
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| Q |
206 |
caagtggcattggccaaatgatggagatgttaatttgatcaataaagtgtatttactatagggttatgtcggggttgaatatatgatatcataaaatgaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33094253 |
caagtggcattggccaaatgatggagatgttaatttgatcaataaagtgtatttactatagggttatgtcggggttgaatatatgatatcataaaatgaa |
33094154 |
T |
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| Q |
306 |
ttagtactagtagatatttaatgcaaagaaatttcaaaagtaacgggaa |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33094153 |
ttagtactagtagatatttaatgcaaagaaatttcaaaagtaacgggaa |
33094105 |
T |
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