View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8228_low_17 (Length: 368)

Name: NF8228_low_17
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8228_low_17
NF8228_low_17
[»] chr3 (4 HSPs)
chr3 (61-202)||(28538122-28538263)
chr3 (304-358)||(28537967-28538021)
chr3 (47-85)||(4638172-4638210)
chr3 (53-105)||(7648764-7648816)
[»] chr5 (4 HSPs)
chr5 (53-118)||(7616945-7617010)
chr5 (36-102)||(35638066-35638132)
chr5 (28-103)||(39728387-39728462)
chr5 (28-136)||(21149734-21149842)
[»] scaffold0045 (1 HSPs)
scaffold0045 (28-104)||(58064-58140)
[»] chr6 (3 HSPs)
chr6 (51-100)||(11142629-11142678)
chr6 (51-102)||(8888908-8888959)
chr6 (47-116)||(14107377-14107446)
[»] chr4 (1 HSPs)
chr4 (53-140)||(37369037-37369124)
[»] chr1 (1 HSPs)
chr1 (47-90)||(10507717-10507760)
[»] chr8 (3 HSPs)
chr8 (52-105)||(18091427-18091480)
chr8 (53-105)||(583840-583892)
chr8 (61-105)||(33401829-33401873)
[»] chr2 (2 HSPs)
chr2 (47-136)||(26805314-26805403)
chr2 (37-105)||(41187717-41187785)
[»] scaffold0209 (1 HSPs)
scaffold0209 (53-105)||(12600-12652)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 28538263 - 28538122
Alignment:
Q  61 ttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggattgaaaaccgatgcaaaagtcaacnnnnnnnnnnnnnctataa 160  Q
    ||||| |||||||||  |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||  ||              ||||||    
T  28538263 ttgactagtgtgcatgtctctacgcatgagtcgaattagtcgcccgttattagtggattgaaaaccggtgcaaaagaaaagaaaaaaaaaaaaactataa 28538164  T
Q  161 actaacggcacaaaaataaactccgtcaccgttaacccccca 202  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  28538163 actaacggcacaaaaaaaaactccgtcaccgttaacccccca 28538122  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 28538021 - 28537967
Alignment:
Q  304 gatatatgtgattttcaccctcattacattactgggtcagtgttgattttctctg 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28538021 gatatatgtgattttcaccctcattacattactgggtcagtgttgattttctctg 28537967  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 4638172 - 4638210
Alignment:
Q  47 aggagaaacaacgtttgaccagtgtgcatacctctacgc 85  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  4638172 aggagaaacaacgcttgaccagtgcgcatacctctacgc 4638210  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 7648764 - 7648816
Alignment:
Q  53 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 105  Q
    |||||||||||||||||| ||||||||||||||  ||| |  |||||||||||    
T  7648764 aacaacgtttgaccagtgcgcatacctctacgcacgagccggattagtcgccc 7648816  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 7616945 - 7617010
Alignment:
Q  53 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggat 118  Q
    ||||||||||||||||| ||||| ||||||||| ||||||| |||||||| || ||||| ||||||    
T  7616945 aacaacgtttgaccagtatgcatgcctctacgcatgagtcagattagtcgtccattattggtggat 7617010  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 35638132 - 35638066
Alignment:
Q  36 attcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcg 102  Q
    |||||||| | ||||| |||||||||||  ||||||||||||||||||||  |||||| ||||||||    
T  35638132 attcgattttcaggaggaacaacgtttggtcagtgtgcatacctctacgcacgagtcagattagtcg 35638066  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 39728387 - 39728462
Alignment:
Q  28 aatactagattcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgc 103  Q
    ||||| || ||||||||| ||  ||||||||  ||| ||||||||||| |||||||||| ||||| ||||||||||    
T  39728387 aataccaggttcgattatcagaggaaacaacacttggccagtgtgcatgcctctacgctcgagtcgaattagtcgc 39728462  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 21149734 - 21149842
Alignment:
Q  28 aatactagattcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggattgaaaaccg 127  Q
    ||||| || ||||||| | ||| | |||||||||||||||||| ||||  ||||||||  ||||   |||||||||||   ||| |||||| ||||||||    
T  21149734 aataccaggttcgattttcagggggaacaacgtttgaccagtgcgcatgactctacgcacgagttggattagtcgcccaccattggtggatagaaaaccg 21149833  T
Q  128 atgcaaaag 136  Q
    |||| ||||    
T  21149834 atgcgaaag 21149842  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 58140 - 58064
Alignment:
Q  28 aatactagattcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcc 104  Q
    ||||||||||| ||||   || ||||||||||||||||||||||| |||||||||||| |||||   ||||||||||    
T  58140 aatactagatttgattcctagaagaaacaacgtttgaccagtgtgtatacctctacgcatgagttggattagtcgcc 58064  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 11142629 - 11142678
Alignment:
Q  51 gaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagt 100  Q
    |||||||||||||||||||| |||| ||||||||| ||||||| ||||||    
T  11142629 gaaacaacgtttgaccagtgcgcatgcctctacgcatgagtcagattagt 11142678  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 8888908 - 8888959
Alignment:
Q  51 gaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcg 102  Q
    ||||||||||||| |||||| |||||||||||||| ||||||  ||||||||    
T  8888908 gaaacaacgtttggccagtgcgcatacctctacgcatgagtcggattagtcg 8888959  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 14107446 - 14107377
Alignment:
Q  47 aggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtgg 116  Q
    ||||| ||||||| ||||||||||  ||| ||||||||| |||| |  ||||||||||| ||||||||||    
T  14107446 aggaggaacaacgcttgaccagtgcacatgcctctacgcatgagccggattagtcgcccattattagtgg 14107377  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 37369124 - 37369037
Alignment:
Q  53 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggattgaaaaccgatgcaaaagtcaa 140  Q
    ||||||||||| ||||||||||| |||||||||  |||||  || ||||||||  |||| ||| || | |||||||||| ||||||||    
T  37369124 aacaacgtttgtccagtgtgcatgcctctacgcacgagtcggataagtcgcccactattggtgaatcggaaaccgatgcgaaagtcaa 37369037  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 10507717 - 10507760
Alignment:
Q  47 aggagaaacaacgtttgaccagtgtgcatacctctacgcttgag 90  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  10507717 aggaggaacaacgtttggccagtgtgcatacctctacgcatgag 10507760  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 18091427 - 18091480
Alignment:
Q  52 aaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 105  Q
    ||||||||||||||||||| |||| |||||||||  ||| | ||||||||||||    
T  18091427 aaacaacgtttgaccagtgcgcatgcctctacgcacgaggcgaattagtcgccc 18091480  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 583840 - 583892
Alignment:
Q  53 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 105  Q
    ||||||| |||||||||| |||| ||||||||| ||||||  |||||||||||    
T  583840 aacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgccc 583892  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 33401873 - 33401829
Alignment:
Q  61 ttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 105  Q
    ||||||||||||||| ||||||||| ||||||  |||||||||||    
T  33401873 ttgaccagtgtgcatgcctctacgcatgagtcggattagtcgccc 33401829  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 26805314 - 26805403
Alignment:
Q  47 aggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggattgaaaaccgatgcaaaag 136  Q
    ||||||||| ||||||| ||||||  ||| ||||||||| ||||||  |||||||||||    || |||| | |||||||||||||||||    
T  26805314 aggagaaacgacgtttggccagtgcacatgcctctacgcatgagtcggattagtcgcccacctttggtggctcgaaaaccgatgcaaaag 26805403  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 41187717 - 41187785
Alignment:
Q  37 ttcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 105  Q
    ||||||||| ||| | ||||||  ||||||||||| ||| ||||||||| |||| || |||||||||||    
T  41187717 ttcgattatgagggggaacaacacttgaccagtgtccatgcctctacgcatgagacatattagtcgccc 41187785  T

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Target: scaffold0209 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 12600 - 12652
Alignment:
Q  53 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 105  Q
    ||||||| |||||||||| |||| ||||||||| ||||||  |||||||||||    
T  12600 aacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgccc 12652  T

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