View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8228_low_18 (Length: 364)

Name: NF8228_low_18
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8228_low_18
NF8228_low_18
[»] chr3 (5 HSPs)
chr3 (1-357)||(35244170-35244539)
chr3 (24-105)||(35243847-35243926)
chr3 (24-106)||(27972620-27972702)
chr3 (4-66)||(41874519-41874581)
chr3 (139-215)||(35242275-35242350)
[»] chr2 (9 HSPs)
chr2 (3-105)||(41602457-41602559)
chr2 (1-102)||(25302815-25302916)
chr2 (1-105)||(25306810-25306914)
chr2 (1-66)||(17308693-17308758)
chr2 (1-66)||(1015727-1015792)
chr2 (1-65)||(33187213-33187277)
chr2 (1-66)||(45033366-45033431)
chr2 (1-66)||(45035161-45035226)
chr2 (1-69)||(30191586-30191654)
[»] chr8 (3 HSPs)
chr8 (1-105)||(44687154-44687258)
chr8 (1-66)||(1173514-1173579)
chr8 (1-66)||(30634268-30634333)
[»] chr4 (1 HSPs)
chr4 (1-107)||(8005909-8006015)
[»] chr1 (3 HSPs)
chr1 (1-105)||(33773206-33773310)
chr1 (1-66)||(44782222-44782287)
chr1 (1-66)||(46679708-46679773)
[»] chr7 (2 HSPs)
chr7 (1-103)||(30511162-30511264)
chr7 (1-66)||(29924636-29924701)
[»] chr5 (4 HSPs)
chr5 (1-66)||(8081508-8081573)
chr5 (1-66)||(25725847-25725912)
chr5 (1-66)||(25502064-25502129)
chr5 (1-66)||(40382796-40382861)
[»] chr6 (1 HSPs)
chr6 (1-46)||(34350393-34350438)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 35244170 - 35244539
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattca 100  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35244170 atcttttatataattttttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattca 35244269  T
Q  101 taatacttgtaaagatagattgagtaccaaagtctct-------------atgatcataatgtatgcacaagaatacatgacaatataaaaataataagt 187  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35244270 taatacttgtaaagatagattgagtaccaaagtctcttagattgtgtcatatgatcataatgtatgcacaagaatacatgacaatataaaaataataagt 35244369  T
Q  188 ttttcagacattacttggtaggttgtctcgttcggatgttgggaagttactttttctaaaggatccagtcgctgcactattgtaattgagcgtgctgcaa 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35244370 ttttcagacattacttggtaggttgtctcgttcggatgttgggaagttactttttctaaaggatccagtcgctgcactattgtaattgagcgtgctgcaa 35244469  T
Q  288 aatctgcaagtaatttatatcaaccgagtaatatgcagaaagagtgcaccaaggtatttatgttcatctc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35244470 aatctgcaagtaatttatatcaaccgagtaatatgcagaaagagtgcaccaaggtatttatgttcatctc 35244539  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 35243926 - 35243847
Alignment:
Q  24 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcataata 105  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35243926 gtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactc--catcctctgattcataata 35243847  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 27972620 - 27972702
Alignment:
Q  24 gtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcataatac 106  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||    
T  27972620 gtgatgactcctaaagatcattatgcattctatcttttcattgtatgggaccttgatattcggtatcctctgattcataatac 27972702  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 41874519 - 41874581
Alignment:
Q  4 ttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||||||||||||||| || ||||||||||||||| ||||   | |||||||||||||||    
T  41874519 ttttatacaattgtttcttggtaatgactcctagagagaattacaaaatctatctttccattg 41874581  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 35242275 - 35242350
Alignment:
Q  139 tgatcataatgtatgcacaagaatacatgacaatataaaaataataagtttttcagacattacttggtaggttgtct 215  Q
    |||| |||||||||| |||  ||||||||| | ||||||| ||||||| ||||||| ||| ||| ||||||||||||    
T  35242275 tgataataatgtatggacacaaatacatgagagtataaaattaataag-ttttcaggcataactcggtaggttgtct 35242350  T

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Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 41602457 - 41602559
Alignment:
Q  3 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattcata 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41602457 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattcata 41602556  T
Q  103 ata 105  Q
    |||    
T  41602557 ata 41602559  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 25302815 - 25302916
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  25302815 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattatatgggaccttgatactcgacatcctctaattca 25302914  T
Q  101 ta 102  Q
    ||    
T  25302915 ta 25302916  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25306810 - 25306914
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattca 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  25306810 atcttttatacaattgtttcttagtgatgactcatagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctaattca 25306909  T
Q  101 taata 105  Q
    |||||    
T  25306910 taata 25306914  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17308693 - 17308758
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    |||||||||||||||||||||| || ||||||||||||| | ||||  || |||||||||||||||    
T  17308693 atcttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattg 17308758  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1015727 - 1015792
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    |||||||||||||||||||||| || | |||||| |||||| ||||  || |||||||||||||||    
T  1015727 atcttttatacaattgtttcttggtaacgactccaagagagaattacacaatctatctttccattg 1015792  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33187277 - 33187213
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccatt 65  Q
    |||||||||||||||||||||| || ||||||| ||||||  ||||  || ||||||||||||||    
T  33187277 atcttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccatt 33187213  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45033366 - 45033431
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||||| || |||  |||| |||||||||||||||||  ||||| || |||||||||||||||    
T  45033366 atcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattg 45033431  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45035161 - 45035226
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||||| || |||  |||| |||||||||||||||||| | ||| || |||||||||||||||    
T  45035161 atcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattg 45035226  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30191586 - 30191654
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtat 69  Q
    |||||||||||||||||||||| || |||| |  ||||||| |||||  | ||||||||| ||||||||    
T  30191586 atcttttatacaattgtttcttggtaatgatttttagagagaattatataatctatcttttcattgtat 30191654  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 44687154 - 44687258
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattca 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44687154 atcttttatacaattgtttcttagtgatgattcctagagagcattatgcattctatctttccattgtatgggaccttgatactcggcatcctctgattca 44687253  T
Q  101 taata 105  Q
    |||||    
T  44687254 taata 44687258  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1173514 - 1173579
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||| || ||||| ||| |||||    
T  1173514 atcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattg 1173579  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30634333 - 30634268
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||   | |||||||||||||||    
T  30634333 atcttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattg 30634268  T

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Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 8005909 - 8006015
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattca 100  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  8005909 atcttttattcaattgtttctttgtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgacactcggcatcctctgattca 8006008  T
Q  101 taatact 107  Q
    |||||||    
T  8006009 taatact 8006015  T

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Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33773206 - 33773310
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattca 100  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  33773206 atcttttatacaattgttttttagtgatgactcctagagagtattatgcattctatctttccatcgtatgggaccttgatactcgacatcctctaattca 33773305  T
Q  101 taata 105  Q
    |||||    
T  33773306 taata 33773310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44782287 - 44782222
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||||||||    
T  44782287 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattg 44782222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 46679708 - 46679773
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  46679708 atcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 46679773  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30511162 - 30511264
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattgtatgggaccttgatactcgacatcctctgattca 100  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  30511162 atcttttatacaattgtttcttactgataactcctagagaacattatgcattctatcttttcattgtataggaccttgatactcggcatcctctgattca 30511261  T
Q  101 taa 103  Q
    |||    
T  30511262 taa 30511264  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29924636 - 29924701
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    |||||||||| |||||||| ||||| ||||||||||||||| ||||  || |||||||||||||||    
T  29924636 atcttttatataattgttttttagtaatgactcctagagagaattacacaatctatctttccattg 29924701  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8081508 - 8081573
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||||||||    
T  8081508 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattg 8081573  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25725912 - 25725847
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||||||| |||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  25725912 atcttttatacgattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 25725847  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25502129 - 25502064
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||||||||||||||||||  | ||||||||||||||| ||||  || ||||| |||||||||    
T  25502129 atcttttatacaattgtttcttgataatgactcctagagagaattacacaatctatatttccattg 25502064  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40382861 - 40382796
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 66  Q
    ||||||| ||||||||||||||||| |||| |||||||||| ||||  || | |||||||||||||    
T  40382861 atcttttttacaattgtttcttagtaatgattcctagagagaattacacaatttatctttccattg 40382796  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34350438 - 34350393
Alignment:
Q  1 atcttttatacaattgtttcttagtgatgactcctagagagcatta 46  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||    
T  34350438 atcttttatacaattgtttcttagtaatgactcctaaagagaatta 34350393  T

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