View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_19 (Length: 362)
Name: NF8228_low_19
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 326
Target Start/End: Complemental strand, 44286167 - 44285863
Alignment:
| Q |
22 |
tcttggacttttctgtattcaattaggctttgtttggattagtttctctcttatggtaggttccagggccggcccaataattttcaatattcggtgaggc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286167 |
tcttggacttttctgtattcaattaggctttgtttggattagtttctctcttatggtaggttccagggccggcccaataattttcaatattcggtgaggc |
44286068 |
T |
|
| Q |
122 |
ttaaatcaaattttataacacgggactttcttatccgcatatgatgccnnnnnnnnctttataaaactgaagacagataaatttttgttggtgggccgaa |
221 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286067 |
ttaaatcaaattttataacacgggacttttttatccgcatatgatgccttttttttctttataaaactgaagacagataaatttttgttggtgggccgaa |
44285968 |
T |
|
| Q |
222 |
aacaagggctttagtggatttacccttgggccggcccttgtaggttctcttctcaattaacataagtttaattgttaagaagctttagtactcaatccgt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44285967 |
aacaagggctttagtggatttacccttgggccggcccttgtaggttctcttctcaattaacataagtttaattgttaagaagctttagtactcaatccat |
44285868 |
T |
|
| Q |
322 |
ctctg |
326 |
Q |
| |
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||||| |
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| T |
44285867 |
ctctg |
44285863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 44069843 - 44070150
Alignment:
| Q |
19 |
ctgtcttggacttttctgtattcaattaggctttgtttggattagtttctctcttatggtaggttccagggccggcccaataattttcaatattcggtga |
118 |
Q |
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|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44069843 |
ctgtcttggacttttctgtatttaaataggcttactttggattagtttctctcttatggtaagttccagggccggcccaataattttcaatattcggtga |
44069942 |
T |
|
| Q |
119 |
ggcttaaatcaaattttataacacgggactttctt-atccgcatatgatgccnnnnnnnnctttataaaactgaagacagataaatttttgttggtgggc |
217 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| || ||| || ||||| ||| ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
44069943 |
ggcttaaatcaaatattataatacgggactttttttatctgcgtatgaggccttttttt-ctttataaaactgaagacaaataaatttgtgttggtgggc |
44070041 |
T |
|
| Q |
218 |
cgaaaacaagggctttagtggatttacccttgggccggcccttgtaggttctcttctcaattaacataagtttaattgttaagaagctttagtactcaat |
317 |
Q |
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||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
44070042 |
cgaaagcaagagctttagtggtcttacccttgggccggcccgtgtaggttctcttctcaattaacataagtttaatttctaaggagctttagtactcaat |
44070141 |
T |
|
| Q |
318 |
ccgtctctg |
326 |
Q |
| |
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| ||||||| |
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| T |
44070142 |
ctgtctctg |
44070150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 44083955 - 44083824
Alignment:
| Q |
19 |
ctgtcttggacttttctgtattcaattaggctttgtttggattagtttctctcttatggtaggttccagggccggcccaataattttcaatattcggtga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
44083955 |
ctgtcttggacttttctgtattcaattaggcttactttggattagtttctctcttatggtaagttccagggccggcccaataattttcaatatttggtga |
44083856 |
T |
|
| Q |
119 |
ggcttaaatcaaattttataacacgggacttt |
150 |
Q |
| |
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|||||||||||||| |||||| |||||||||| |
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| T |
44083855 |
ggcttaaatcaaatattataatacgggacttt |
44083824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 47442470 - 47442538
Alignment:
| Q |
191 |
aagacagataaatttttgttggtgggccgaaaacaagggctttagtggatttacccttgggccggccct |
259 |
Q |
| |
|
||||||||||||||||||||||||| || ||| | | ||||||||||| |||||||| ||||||||| |
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| T |
47442470 |
aagacagataaatttttgttggtggacctaaagctatggctttagtggccttacccttaagccggccct |
47442538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 16443464 - 16443773
Alignment:
| Q |
19 |
ctgtcttggacttttctgtattcaa-ttaggctttgtttggattagtttctctcttatggtaggttccagggccggcccaataattttcaatattcggtg |
117 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
16443464 |
ctgtcttggacttttctgtatttaaattaggcttactttggattagtttctctcttatggtaagttccagggccggcccaataattttcaatanttggtg |
16443563 |
T |
|
| Q |
118 |
aggcttaaatcaaattttataacacgggactttctt-atccgcatatgatgccnnnnnnnnctttataaaactgaagacagataaatttttgttggtggg |
216 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| || ||| || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| |
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| T |
16443564 |
aggcttaaatcaaatattataatacgggactttttttatctgcgtatgaggccttttttttctttataaaactgaagacaaataaatttgtgttggtggg |
16443663 |
T |
|
| Q |
217 |
ccgaaaacaagggctttagtggatttacccttgggccggcccttgtaggttctcttctcaattaacataagtttaattgttaagaagctttagtactcaa |
316 |
Q |
| |
|
|||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
16443664 |
ccgaaagcaagagctttagtggtcttacccttgggccggcccgtgtaggttctcttctcaattaacataagtttaatttctaaggagctttagtactcaa |
16443763 |
T |
|
| Q |
317 |
tccgtctctg |
326 |
Q |
| |
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|| ||||||| |
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| T |
16443764 |
tctgtctctg |
16443773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 7261891 - 7261923
Alignment:
| Q |
5 |
tgttaaagaccaaactgtcttggacttttctgt |
37 |
Q |
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|||||||||||||||||||||||| |||||||| |
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|
| T |
7261891 |
tgttaaagaccaaactgtcttggatttttctgt |
7261923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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