View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_20 (Length: 360)
Name: NF8228_low_20
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 11991302 - 11991558
Alignment:
| Q |
3 |
cagtagtaaggtgtgtacacgatgctgcaaaacctgatgcaattgatgaattcaatcatagactgcatagaagttcttgcaaggctagacaatacttgaa |
102 |
Q |
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| T |
11991302 |
cagtagtaaggtgtgtacatggtgctgcaaaacctgatgcaactgatgaatt-aatcatagactgcatagaagttcttgcaaggctagagaatactagtg |
11991400 |
T |
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| Q |
103 |
gtatctttttgttgaaagagattgtaatgctgtagcacgtagtcttgtcagcttctcactttctg-tggttgtatgctttgggaaggcaaagttcctgac |
201 |
Q |
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| T |
11991401 |
ttatc--tttgttcaaagagattgcaatactgtagcacatagtcttgtcagcttagcactttctgctgggtgtaagctttgggaagccaatgttcctgac |
11991498 |
T |
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| Q |
202 |
caaattatggctgctgtttgtaaggatttaccatttatctaatgagattcctttcctgtc |
261 |
Q |
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| T |
11991499 |
caaattatggcttctgtttgtaaggatttaccatttatctaatgaaattcctttcctgtc |
11991558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 222 - 354
Target Start/End: Original strand, 12013065 - 12013194
Alignment:
| Q |
222 |
taaggatttaccatttatctaatgagattcctttcctgtcnnnnnnntaaaataagagagattttgagttaactagtctaactatagaaatgattcatgg |
321 |
Q |
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| T |
12013065 |
taaggatttaccatttatctaatgagattcctttcctgtcaaaaa---aaaaaaaaagagattttaagttaactagtctatctttagaaatgattcatgg |
12013161 |
T |
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| Q |
322 |
caacacattatggcgtaatttgattcatctcac |
354 |
Q |
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| T |
12013162 |
caacacattatggtgtaatttgattcatgtcac |
12013194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 12024514 - 12024595
Alignment:
| Q |
274 |
taagagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatggcgtaatttgattcatctcact |
355 |
Q |
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| T |
12024514 |
taagagagattttcagttaactagtctatctttagaaatgattcatgacaacacattatggcatcacttgattcatgtcact |
12024595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12021493 - 12021576
Alignment:
| Q |
1 |
aacagtagtaaggtgtgtacacgatgctgcaaaacctgatgcaattgatgaattcaatcatagactgcatagaagttcttgcaag |
85 |
Q |
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| T |
12021493 |
aacaatagtaaggtgtgtacgtggtgctgcaaaacttgctgcaattgatgaatt-aatcatagattgcatagaagttcttgcaag |
12021576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 11991588 - 11991655
Alignment:
| Q |
277 |
gagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatggcgtaatttgattc |
347 |
Q |
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| T |
11991588 |
gagagattttgagttaacaagtctatcttcagaaatgattcatgg---cacattatgacataatttgattc |
11991655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 43497657 - 43497599
Alignment:
| Q |
275 |
aagagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatg |
333 |
Q |
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| T |
43497657 |
aagagagaatttgagttaactaatctatctttagaaatgattcatgataacatattatg |
43497599 |
T |
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