View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8228_low_23 (Length: 329)
Name: NF8228_low_23
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_23 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 15011050 - 15010740
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15011050 |
tatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataac |
15010951 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010950 |
attcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacatagacaacataccaagttttttagggatg |
15010851 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010850 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
15010751 |
T |
|
| Q |
301 |
agagtttgaac |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
15010750 |
agagtttgaac |
15010740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 15002157 - 15001849
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002157 |
tatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
15002058 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15002057 |
attcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacatagacaacataccaagtttttcagggatg |
15001958 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |
|
|
| T |
15001957 |
aatccactcaaattatttgttgcaagctccaatgcagttagttgatgcaatgatgcaatttgtactggaacttctccataaagatgattgttacttaacg |
15001858 |
T |
|
| Q |
301 |
agagtttga |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
15001857 |
agagtttga |
15001849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 15037070 - 15036760
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037070 |
tatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
15036971 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
15036970 |
attcaattggccaaactcaacaggaatgttcccctcaagcttattatggctcaaattcaactgcaataacctagacaacataccaagtttttccaggatg |
15036871 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15036870 |
aagccacttaagttatttgttgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaacg |
15036771 |
T |
|
| Q |
301 |
agagtttgaac |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
15036770 |
agagtttgaac |
15036760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 15025167 - 15024859
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
15025167 |
tatgtgagagattcaatgtttctaagcgatttaactgcccaagcattgatggtatggttccattcataaaattcccactaagatcaagattttcaataac |
15025068 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
15025067 |
attcaattgggcaaactcagcaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacctagataacctaccaagtcttttagggatg |
15024968 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
15024967 |
aagccactcaaattatttgttgcaagctccaatgcagttagctcgtgcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacg |
15024868 |
T |
|
| Q |
301 |
agagtttga |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
15024867 |
agagtttga |
15024859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 15032508 - 15032200
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
15032508 |
tatgtgagagattcaatgtttctaagcgatttaactgcccaagcattgatggtatggttccattcataaaattcccactaagatcaagattttcaataac |
15032409 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
15032408 |
attcaattgggcaaactcagcaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacctagataacctaccaagtcttttagggatg |
15032309 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
15032308 |
aagccactcaaattatttgttgcaagctccaatgcagttagctcgtgcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacg |
15032209 |
T |
|
| Q |
301 |
agagtttga |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
15032208 |
agagtttga |
15032200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 15017165 - 15016857
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15017165 |
tatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataac |
15017066 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
15017065 |
attcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaacttcaataacctagacaacataccaagtttttcagggatg |
15016966 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
15016965 |
aagccactgaaattatttgctgcaagctccaatgcagttaattcgtgcaatgattcaatttgttcaggaacttctccagaaagatgattgttacttaacg |
15016866 |
T |
|
| Q |
301 |
agagtttga |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
15016865 |
agagtttga |
15016857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 14522686 - 14522991
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||| | ||||||||| |
|
|
| T |
14522686 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgttggtatggttccattcaaaaaattcccgctaagatcaagatcttcaataac |
14522785 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
||||||||| |||| ||| |||||||||| || | |||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||| |
|
|
| T |
14522786 |
attcaattgaccaagttcaacaggaatgtttccttcaaacttattttggctcaaattcaactgcaataacctagacaaccttccaagtttttcagggata |
14522885 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|| ||||| ||||||||| ||||||| ||||||| |||||||| ||||||||||||||| || | |||||||||||| ||||||||||| ||||||| | |
|
|
| T |
14522886 |
aaaccacttaaattatttgttgcaagatccaatgtagttagttcatgcaatgatgcaatctgcataggaacttctcccgaaagatgattattacttatcg |
14522985 |
T |
|
| Q |
301 |
agagtt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
14522986 |
agagtt |
14522991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 14504032 - 14503724
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| |||||| ||||| |||||||||||| |||| ||||| |||||||| | ||||||||| |
|
|
| T |
14504032 |
tatgtgagagattcaatgtttctaaatgatttaacactccaaacattgaaggtatcgttccattcataaaatttccactgagatcaagatcttcaataac |
14503933 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
||| ||| ||||||||||| | |||||||| || | |||||||||||||||||||||||| || | |||| ||||||| | |||||| || |||||||| |
|
|
| T |
14503932 |
atttaatcggccaaactcaacgggaatgtttccttcaaacttattttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatg |
14503833 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| | ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
14503832 |
aagccacttaaattatttgttgcaagctccaaggtagttagtgcttgcaatgatgcaatttgtataggaacctctccagaaagatgattgttacttatcg |
14503733 |
T |
|
| Q |
301 |
agagtttga |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
14503732 |
agagtttga |
14503724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 14532807 - 14533115
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| | ||||||||| |
|
|
| T |
14532807 |
tatgtgaaagattcaatgtttgtaagtgatttaactgtccaagcattgatggtatggttccactcataacattttcactaagatcaagatcttcaataac |
14532906 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
|| |||||| |||||||| |||||||||| || | ||||||||||||||||||||||| || | |||| ||||||| | |||||| || |||||||| |
|
|
| T |
14532907 |
ctttaattggtcaaactcaacaggaatgtttccttcgaacttattttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatg |
14533006 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||| ||| | |
|
|
| T |
14533007 |
aagccacttaaattatttttttcaagctccaaggcagttagtgcctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcg |
14533106 |
T |
|
| Q |
301 |
agagtttga |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
14533107 |
agagtttga |
14533115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 14467853 - 14467548
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||| |||| | ||||| ||||||||||||| | ||||| ||| |
|
|
| T |
14467853 |
tatgtgagagattcaatgtttctaagtgatttaactgtccaaacattgctggaatggttccgttcaaaaaattctcactaagatcaagatcttcaagaac |
14467754 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
||| |||||||||||||| |||||||||| || | |||| |||||| ||| |||||||| || |||||||| ||||| | ||||||| ||| ||||| |
|
|
| T |
14467753 |
atttaattggccaaactcgacaggaatgtttccttcaaacatatttttgcttaaattcaagtgtaataacattgacaaacttccaagttgttttgggatt |
14467654 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
| ||||| ||||||||| ||| ||||||||| | | ||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||||||| | |
|
|
| T |
14467653 |
gaaccacttaaattatttgttgaaagctccaaggtatctagtttttgcaatgatgcaacttgtgcaggaacttctcctgaaagatgattgttacttaccg |
14467554 |
T |
|
| Q |
301 |
agagtt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
14467553 |
agagtt |
14467548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 15040801 - 15040536
Alignment:
| Q |
9 |
agattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataacattcaatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| || || | |
|
|
| T |
15040801 |
agattcaatgtttctaagcgatttaactgtccaagcattgttggtatggttccattcaaagaattcccactaagatcaagattttcaataacttttaact |
15040702 |
T |
|
| Q |
109 |
ggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatgaagccact |
208 |
Q |
| |
|
| |||| |||| |||||||||| || | ||||||||||||||||| ||| || || ||||||||||| || | ||||||| ||| |||| ||||||||| |
|
|
| T |
15040701 |
gtccaatctcatcaggaatgtttccttcaaacttattttggctcatatttaagtgtaataacatagataatcttccaagttgttttgggacgaagccact |
15040602 |
T |
|
| Q |
209 |
caaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttc |
274 |
Q |
| |
|
||||||||| |||| |||||||| || | || | |||||| |||||||||||||||||||| |
|
|
| T |
15040601 |
taaattatttgttgccagctccaagatagcaacttccttcaatgaggcaatttgtacaggaacttc |
15040536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14482035 - 14481837
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||| |||| | ||||| ||||||||||||| | ||||| ||| |
|
|
| T |
14482035 |
tatgtgagagattcaatgtttctaagtgatttaactgtccaaacattgctggaatggttccgttcaaaaaattctcactaagatcaagatcttcaagaac |
14481936 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggat |
199 |
Q |
| |
|
||| |||||||||||||| |||||||||| || | |||| |||||| ||| |||||||| || |||||||| ||||| | ||||||| ||| ||||| |
|
|
| T |
14481935 |
atttaattggccaaactcgacaggaatgtttccttcaaacatatttttgcttaaattcaagtgtaataacattgacaaacttccaagttgttttgggat |
14481837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 6541 - 6245
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||| | ||||||||||| |||||||||| |
|
|
| T |
6541 |
tatgtgagagattcaatgtttctaagcgatttaactctccaagcattgttggtatggttccattcaaaacattctcgctaagatcaagattttcaataat |
6442 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| || | |||||||||||||||||||||||| | |||||| ||| || | ||||||| || |||||| |
|
|
| T |
6441 |
tttcaattgtccaaactcagcaggaatgtctccttcaaacttattttggctcaaattcaagtccaataaattaggtaatcttccaagttgttctgggatg |
6342 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttactta |
297 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||| || ||||||| ||||||||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
6341 |
aagccactgaaattatttgttgcaagctccaagatagttattttatgcaataatgcaatttgttcaggaacttctcctacaagatgattgctactta |
6245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 12829 - 12521
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||| |||| | |||| |||||||| ||||| | ||||||||| |
|
|
| T |
12829 |
tatgtgaaagattcaatgtttgtatgtgatttaactgtccaagcattgatggtatggttccgttcaaaaaatttccactaaggtcaagatcttcaataac |
12730 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
| ||||||||||||||| |||||||| || | |||| ||||||||||||||||||| || | |||| ||||||| | |||||| || |||||||| |
|
|
| T |
12729 |
ttctaattggccaaactcaatgggaatgtttccttcaaacctattttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatg |
12630 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||| ||| | |
|
|
| T |
12629 |
aagccacttaaattatttttttcaagctccaaggcagttagtgcctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcg |
12530 |
T |
|
| Q |
301 |
agagtttga |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
12529 |
agagtttga |
12521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 7185 - 6889
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||| | ||||||||||| |||||||||| |
|
|
| T |
7185 |
tatgtgagagattcaatgtttctaagcgatttaactctccaagcattgttggtatggttccattcaaaacattctcgctaagatcaagattttcaataat |
7086 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| || | |||||||||||||||||||||||| | |||||| ||| || | ||||||| || |||||| |
|
|
| T |
7085 |
tttcaattgtccaaactcagcaggaatgtctccttcaaacttattttggctcaaattcaagtccaataaattaggtaatcttccaagttgttctgggatg |
6986 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttactta |
297 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||| || ||||||| ||||||||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
6985 |
aagccactgaaattatttgttgcaagctccaagatagttattttatgcaataatgcaatttgttcaggaacttctcctacaagatgattgctactta |
6889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 13472 - 13164
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||| |||| | |||| |||||||| ||||| | ||||||||| |
|
|
| T |
13472 |
tatgtgaaagattcaatgtttgtatgtgatttaactgtccaagcattgatggtatggttccgttcaaaaaatttccactaaggtcaagatcttcaataac |
13373 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaacataccaagttttttagggatg |
200 |
Q |
| |
|
| ||||||||||||||| |||||||| || | |||| ||||||||||||||||||| || | |||| ||||||| | |||||| || |||||||| |
|
|
| T |
13372 |
ttctaattggccaaactcaatgggaatgtttccttcaaacctattttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatg |
13273 |
T |
|
| Q |
201 |
aagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaagg |
300 |
Q |
| |
|
|||||||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||| ||| | |
|
|
| T |
13272 |
aagccacttaaattatttttttcaagctccaaggcagttagtgcctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcg |
13173 |
T |
|
| Q |
301 |
agagtttga |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
13172 |
agagtttga |
13164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 17848542 - 17848423
Alignment:
| Q |
40 |
caagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaa |
139 |
Q |
| |
|
||||| |||| ||||| ||||| || | | ||||||||||||||||||| ||| || || || ||||||||||||||| ||||||| || || ||||| |
|
|
| T |
17848542 |
caagcgttgacggtattgttccgttgagaaaattcccactaagatcaagactttgaaggactttaaattggccaaactcaacaggaatatttcctttaaa |
17848443 |
T |
|
| Q |
140 |
cttattttggctcaaattca |
159 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
17848442 |
tttgttatggctcaaattca |
17848423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 14605948 - 14605834
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||||| |||||||||||| ||| || |||||| ||||||||||||||| ||||||| || | |||| ||||| ||||| ||| |||||| || |
|
|
| T |
14605948 |
tatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggac |
14605849 |
T |
|
| Q |
101 |
attcaattggccaaa |
115 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
14605848 |
attaaattgtccaaa |
14605834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 15670742 - 15670868
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||| | |||||||||||||||||| || | | ||||||||||| |||||| | |||||||| | ||| ||||| |||||||| |||||| || |
|
|
| T |
15670742 |
tatgtgaaatattcaatgtttctaagcgtttcaggtttccaagcattggtggtatagctccattcaaaacatttccactgagatcaagactttcaaggac |
15670841 |
T |
|
| Q |
101 |
attcaattggccaaactcagcaggaat |
127 |
Q |
| |
|
|| ||||| ||||||||| ||||||| |
|
|
| T |
15670842 |
tttaaattgtccaaactcatcaggaat |
15670868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 16025125 - 16025011
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||||| |||||||||||| ||| || |||||| ||||||||||||||| ||||||| || | |||| ||||| ||||| ||| |||||| || |
|
|
| T |
16025125 |
tatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggac |
16025026 |
T |
|
| Q |
101 |
attcaattggccaaa |
115 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
16025025 |
attaaattgtccaaa |
16025011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16172607 - 16172519
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaagg |
89 |
Q |
| |
|
||||||||| |||||||||||| ||| || |||||| ||||||||||||||| |||||||| | | |||| ||||| ||||||||| |
|
|
| T |
16172607 |
tatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatttaaaaaatttccactcagatcaagg |
16172519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 15677144 - 15677262
Alignment:
| Q |
1 |
tatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgatggtatggttccattcatagaattcccactaagatcaaggttttcaataac |
100 |
Q |
| |
|
||||||| | |||||||||||||||||| || | | ||||||||||| |||||||| ||| |||| | ||| ||||| |||||||| |||||| || |
|
|
| T |
15677144 |
tatgtgaaatattcaatgtttctaagcgtttcaggtttccaagcattggtggtatggctcctttcaaaacatttccactgagatcaagactttcaaggac |
15677243 |
T |
|
| Q |
101 |
attcaattggccaaactca |
119 |
Q |
| |
|
|| ||||| ||||||||| |
|
|
| T |
15677244 |
tttaaattgtccaaactca |
15677262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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