View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_24 (Length: 324)
Name: NF8228_low_24
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 107 - 316
Target Start/End: Original strand, 21556690 - 21556899
Alignment:
| Q |
107 |
cactcaattgtggtgtgcactatttgacaagactaggaagcactcataaaaatgtatgtgattaagaaaaattattacctcttggacaagatcatcccaa |
206 |
Q |
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| T |
21556690 |
cactcaattgtggggtgcactatttgacaagactaggaagcactcataaaaatgtatgtgattaagaaaaattattacctcttggacaagatcatcccaa |
21556789 |
T |
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| Q |
207 |
gcatcctgaaagtgggtcccaaagaggagaccagccccaccttggtcagtagggtccactgaagttctgcctaaacaaaccaagaacatggaccccttac |
306 |
Q |
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| T |
21556790 |
gcatcctgaaagtgggtcccaaagaggagaccagccccaccttggtcagtagggtccactgaagttctgcctaaacaaaccaagaacatggaccccttac |
21556889 |
T |
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| Q |
307 |
ttttcatctc |
316 |
Q |
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|||||||||| |
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| T |
21556890 |
ttttcatctc |
21556899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 20852808 - 20852929
Alignment:
| Q |
182 |
tacctcttggacaagatcatcccaagcatcctgaaagtgggtcccaaagaggagaccagccccaccttggtcagtagggtccactgaagttctgcctaaa |
281 |
Q |
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| T |
20852808 |
tacctcttgtacaaggtcatcccaagcatcctgaaagtgggtcccaaaaagaactccagcaccaccttgttctgtggggtccactgaagttctgcctaag |
20852907 |
T |
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| Q |
282 |
caaaccaagaacatggacccct |
303 |
Q |
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| T |
20852908 |
caaactaagaacatggacccct |
20852929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 21556602 - 21556637
Alignment:
| Q |
19 |
cacataattcattttatttgaaacttatttttaact |
54 |
Q |
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| T |
21556602 |
cacataattcattttatttgaaacttatttttaact |
21556637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 41000469 - 41000590
Alignment:
| Q |
182 |
tacctcttggacaagatcatcccaagcatcctgaaagtgggtcccaaagaggagaccagccccaccttggtcagtagggtccactgaagttctgcctaaa |
281 |
Q |
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| T |
41000469 |
tacctcttgtacaaggtcatcccaagcatcctgaaagtgggtcccaaaaagaactccagcaccaccttgttctgtggggtccactgaagttctgcctaag |
41000568 |
T |
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| Q |
282 |
caaaccaagaacatggacccct |
303 |
Q |
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| T |
41000569 |
caaactaagaacatggacccct |
41000590 |
T |
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