View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_26 (Length: 310)
Name: NF8228_low_26
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_26 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 28275296 - 28275029
Alignment:
| Q |
21 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28275296 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
28275197 |
T |
|
| Q |
121 |
gttctctatctattatttcatcttcagcaactgatattagtttcacattgggatccattggtgtttctgctcccttacaccctgtcatccctgtctctgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28275196 |
gttctctatctattatttcatcttcagcaactgattttagtttcacattgggatccattggtgtttctgctgccttacaccctgtcatccctgtctctgt |
28275097 |
T |
|
| Q |
221 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28275096 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
28275029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 28354046 - 28353779
Alignment:
| Q |
21 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28354046 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
28353947 |
T |
|
| Q |
121 |
gttctctatctattatttcatcttcagcaactgatattagtttcacattgggatccattggtgtttctgctcccttacaccctgtcatccctgtctctgt |
220 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28353946 |
gttctctatctattatttcatcttcagcaactgattttagtttcacattgggatccattggtgtttctgctgccttacaccctgtcatccctgtctctgt |
28353847 |
T |
|
| Q |
221 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28353846 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
28353779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 296892 - 296625
Alignment:
| Q |
21 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
296892 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
296793 |
T |
|
| Q |
121 |
gttctctatctattatttcatcttcagcaactgatattagtttcacattgggatccattggtgtttctgctcccttacaccctgtcatccctgtctctgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
296792 |
gttctctatctattatttcatcttcagcaactgattttagtttcacattgggatccattggtgtttctgctgccttacaccccgtcatccctgtctctgt |
296693 |
T |
|
| Q |
221 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
296692 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
296625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 20753818 - 20754085
Alignment:
| Q |
21 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20753818 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
20753917 |
T |
|
| Q |
121 |
gttctctatctattatttcatcttcagcaactgatattagtttcacattgggatccattggtgtttctgctcccttacaccctgtcatccctgtctctgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
20753918 |
gttctctatctattatttcatcttcagcaactgattttagtttcacattgggatccattggtgtttctgctgccttacaccccgtcatccctgtctctgt |
20754017 |
T |
|
| Q |
221 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20754018 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
20754085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 27266990 - 27266723
Alignment:
| Q |
21 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27266990 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
27266891 |
T |
|
| Q |
121 |
gttctctatctattatttcatcttcagcaactgatattagtttcacattgggatccattggtgtttctgctcccttacaccctgtcatccctgtctctgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
27266890 |
attctctatctattatttcatcttcagcaactgattttagtttcacattgggatccattggtgtttctgctgccttacaccccgtcatccctgtctctgt |
27266791 |
T |
|
| Q |
221 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27266790 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
27266723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 29634771 - 29635038
Alignment:
| Q |
21 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29634771 |
cctggtgcatgcataaattggcttattacgctcacagcaaatgctatatcaggccttgtatgtgacaaataaattagcctaccagccaaccgttgatagc |
29634870 |
T |
|
| Q |
121 |
gttctctatctattatttcatcttcagcaactgatattagtttcacattgggatccattggtgtttctgctcccttacaccctgtcatccctgtctctgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
29634871 |
gttctctatctattatttcatcttcaacaactgattttagtttcacattgggatccattggtgtttctgctgccttacaccccgtcatccctgtctctgt |
29634970 |
T |
|
| Q |
221 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29634971 |
gagtaaatcaagtatatacttccgctggttgaggaaaattccttctttcgatcttgcaaactccatac |
29635038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 25490793 - 25490676
Alignment:
| Q |
140 |
atcttcagcaactgatattagtttcacattgggatccattggtgtttctgctcccttacaccctgtcatccctgtctctgtgagtaaatcaagtatatac |
239 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||| || |||| ||| |||||||||||||||||||| ||| |
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|
| T |
25490793 |
atcttcggcaactgattttagtttcacattgggatatattggtgttgctgctgccttacaccccgtaatccttgtttctgtgagtaaatcaagtat-tac |
25490695 |
T |
|
| Q |
240 |
ttccgctggttgaggaaaa |
258 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
25490694 |
ttccgctgattgatgaaaa |
25490676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 56526187 - 56526154
Alignment:
| Q |
255 |
aaaattccttctttcgatcttgcaaactccatac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
56526187 |
aaaattccttctttcgatcttgcaaactccatac |
56526154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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